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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TATATACCTTCTGTAGAAGATACAGTTCTTGGTGTTGTGGTTGACACCAAACCAGATgtaagtacatttatgtatatttatgtaaattaattcttctatatggtgcattttttagtatgtggacctaattgttttgatacaatcactgttctgtaca...

Basic information

species Oryza sativa
transcript LOC_Os01g47256.2
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g47256.2 (Oryza sativa), 5'ss of exon 4
lower sequence: GRMZM2G173989_T01 (Zea mays), 5'ss of exon 5
TATATACCTTCTGTAGAAGATACAGTTCTTGGTGTTGTGGTTGACACCAAACCAGATgtaagta--catttatgtatatt--tatgtaaattaattcttctatatggtgcattttttagtatgtggacctaattgtt-ttgatacaatcactgttctgtaca
||||||||||||||||||||||| ||||||||| ||||||| |||||||||||||| |||||||  ||||||| |  |    ||||| | || || ||| | | | |   |||| |  |    |       ||  |   ||  | ||  |   || ||    
TATATACCTTCTGTAGAAGATACCGTTCTTGGTATTGTGGTCGACACCAAACCAGACgtaagtatacatttatattcaggagtatgtgagttgatacttgtttctag-atatttatctgaggctaccatggataatggctgtcaaaactataattatg----

upper sequence: LOC_Os01g47256.2 (Oryza sativa), 5'ss of exon 4
lower sequence: GRMZM5G802854_T01 (Zea mays), 5'ss of exon 5
TATATACCTTCTGTAGAAGATACAGTTCTTGGTGTTGTGGTTGACACCAAACCAGATgtaagta--catttatg--tatatttatgtaaattaattcttctatatggtgcattttttagtatgtggacctaattgtt-ttgatacaatcactgttctgtaca
|||| |||||||||||||||||| ||||||||| ||||||| |||||||||||||| |||||||  |||||||    |    ||||| | || || ||| | | | |   |||| |  |    |   |   ||  |   ||  | ||  |   || ||    
TATAAACCTTCTGTAGAAGATACCGTTCTTGGTATTGTGGTCGACACCAAACCAGACgtaagtatacatttataatcaggagtatgtgagttgatacttgtttctag-atatttatatgaggctaccctggatcatggctgtcaaaactataattatg----

upper sequence: LOC_Os01g47256.2 (Oryza sativa), 5'ss of exon 4
lower sequence: GRMZM2G540589_T01 (Zea mays), 5'ss of exon 3
TATATACCTTCTGTAGAAGATACAGTTCTTGGTGTTGTGGTTGACACCAAACCAGATgtaagtacatttatgtatatttatgtaaattaattcttctatatggtgcattttttagtatgtggacctaattgttttgatacaat----cactgttctgtaca-------
|||||||||| ||||||||||||||||||||||  |||     | ||       | || ||  | |  || |  |  | ||| |   |    ||  ||| || | ||      |  |   |  | ||||| | ||  | |||      | |||| | |          
TATATACCTTATGTAGAAGATACAGTTCTTGGTACTGTC----ATACTG---TGGTTGGAACCAAACctaggggtggtaatggatcatggccctaatatttgcttcacaaaccaacaaa-gcccttaattttgttagttcaaaattatattgttttatgatccggccc

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58653630|gb|CK042310.1|CK042310
EST:     CTTCTGTAGAAGATACAGTTCTTGGTGTTGTGGTTGACACCAAACCAGAT                         AACTTCTTGGTGGATATAAAAGGTCCTAATTGGGCCTTTTTACCAGTTCTT
genomic: CTTCTGTAGAAGATACAGTTCTTGGTGTTGTGGTTGACACCAAACCAGATgtaagtacat ... gtcattacagAACTTCTTGGTGGATATAAAAGGTCCTAATTTGGCCTTTTTACCAGTTCTT