Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTTCGCACCAAGGTTTTCCATCCAAACATCAACAGCAACGGGAGCATTTGCCTTGACATCCTTAAGGACCAATGGAGCCCAGCACTAACCATTTCCAAGgtttcctttctcgcttaacgctattttccttttgcgaggcggttgcttggtctctcgcagttgggctgaacgaatcccgcaaaaacatgtgctctctgcttgctttcag

Basic information

species Oryza sativa
transcript LOC_Os01g46926.1
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88440649|gb|CI552115.1|CI552115
EST:     GCCTTGACATCCTTAAGGACCAATGGAGCCCAGCACTAACCATTTCCAAG                         GTGTTGCTGTCAATCTGTTCCCTGGTGACTGATCCGAACCCTGATGATCCT
genomic: GCCTTGACATCCTTAAGGACCAATGGAGCCCAGCACTAACCATTTCCAAGgtttcctttc ... ttgctttcagGTGTTGCTGTCAATCTGTTCCCTGCTGACTGATCCGAACCCTGATGATCCT
EST: gi|55431330|gb|CV728679.1|CV728679
EST:     GCCTTGACATCCTTAAGGACCAATGGAGCCCAGCACTAACCATTTCCAAG                         GTGTTGCTGTCAATCTGTTCCCTGCTGACTGATCCGAACCCTGATGATCCT
genomic: GCCTTGACATCCTTAAGGACCAATGGAGCCCAGCACTAACCATTTCCAAGgtttcctttc ... ttgctttcagGTGTTGCTGTCAATCTGTTCCCTGCTGACTGATCCGAACCCTGATGATCCT
EST: gi|27577520|gb|CB000215.1|CB000215
EST:     GCCTTGACATCCTTAAGGACCAATGGAGCCCAGCACTAACCATTTCCAAG                         GTGTTGCTGTCAATCTGTTCCCTGCTGACTGATCCGAACCCTGATGATCCT
genomic: GCCTTGACATCCTTAAGGACCAATGGAGCCCAGCACTAACCATTTCCAAGgtttcctttc ... ttgctttcagGTGTTGCTGTCAATCTGTTCCCTGCTGACTGATCCGAACCCTGATGATCCT
EST: gi|86834009|gb|CI340148.1|CI340148
EST:     GCCTTGACATCCTTAAGGACCAATGGAGCCCAGCACTAACCATTTCCAAG                         GTGTTGCTGTCAATCTGTTCCCTGCTGACTGATCCGAACCCTGATGATCCT
genomic: GCCTTGACATCCTTAAGGACCAATGGAGCCCAGCACTAACCATTTCCAAGgtttcctttc ... ttgctttcagGTGTTGCTGTCAATCTGTTCCCTGCTGACTGATCCGAACCCTGATGATCCT
EST: gi|55438244|gb|CV732417.1|CV732417
EST:     GCCTTGACATCCTTAAGGACCAATGGAGCCCAGCACTAACCATTTCCAAG                         GTGTTGCTGTCAATCTGTTCCCTGCTGACTGATCCGAACCCTGATGATCCT
genomic: GCCTTGACATCCTTAAGGACCAATGGAGCCCAGCACTAACCATTTCCAAGgtttcctttc ... ttgctttcagGTGTTGCTGTCAATCTGTTCCCTGCTGACTGATCCGAACCCTGATGATCCT
EST: gi|38471522|gb|CF955653.1|CF955653
EST:     GCCTTGACATCCTTAAGGACCAATGGAGCCCAGCACTAACCATTTCCAAG                         GTGTTGCTGTCAATCTGTTCCCTGCTGACTGATCCGAACCCTGATGATCCT
genomic: GCCTTGACATCCTTAAGGACCAATGGAGCCCAGCACTAACCATTTCCAAGgtttcctttc ... ttgctttcagGTGTTGCTGTCAATCTGTTCCCTGCTGACTGATCCGAACCCTGATGATCCT
EST: gi|89168597|gb|CI038449.1|CI038449
EST:     GCCTTGACATCCTTAAGGACCAATGGAGCCCAGCACTAACCATTTCCAAG                         GTGTTGCTGTCAATCTGTTCCCTGCTGACTGATCCGAACCCTGATGATCCT
genomic: GCCTTGACATCCTTAAGGACCAATGGAGCCCAGCACTAACCATTTCCAAGgtttcctttc ... ttgctttcagGTGTTGCTGTCAATCTGTTCCCTGCTGACTGATCCGAACCCTGATGATCCT
EST: gi|33671124|gb|CF299363.1|CF299363
EST:     GCCTTGACATCCTTAAGGACCAATGGAGCCCAGCACTAACCATTTCCAAG                         GTGTTGCTGTCAATCTGTTCCCTGCTGACTGATCCGAACCCTGATGATCCT
genomic: GCCTTGACATCCTTAAGGACCAATGGAGCCCAGCACTAACCATTTCCAAGgtttcctttc ... ttgctttcagGTGTTGCTGTCAATCTGTTCCCTGCTGACTGATCCGAACCCTGATGATCCT
EST: gi|38565753|gb|CK085206.1|CK085206
EST:     GCCTTGACATCCTTAAGGACCAATGGAGCCCAGCACTAACCATTTCCAAG                         GTGTTGCTGTCAATCTGTTCCCTGCTGACTGATCCGAACCCTGATGATCCT
genomic: GCCTTGACATCCTTAAGGACCAATGGAGCCCAGCACTAACCATTTCCAAGgtttcctttc ... ttgctttcagGTGTTGCTGTCAATCTGTTCCCTGCTGACTGATCCGAACCCTGATGATCCT
EST: gi|163920365|gb|EG711740.1|EG711740
EST:     GCCTTGACATCCTTAAGGACCAATGGAGCCCAGCACTAACCATTTCCAAG                         GTGTTGCTGTCAATCTGTTCCCTGCTGACTGATCCGAACCCTGATGATCCT
genomic: GCCTTGACATCCTTAAGGACCAATGGAGCCCAGCACTAACCATTTCCAAGgtttcctttc ... ttgctttcagGTGTTGCTGTCAATCTGTTCCCTGCTGACTGATCCGAACCCTGATGATCCT
EST: gi|88453054|gb|CI536839.1|CI536839
EST:     GCCTTGACATCCTTAAGGACCAATGGAGCCCAGCACTAACCATTTCCAAG                         GTGTTGCTGTCAATCTGTTCCCTGCTGACTGATCCGAACCCTGATGATCCT
genomic: GCCTTGACATCCTTAAGGACCAATGGAGCCCAGCACTAACCATTTCCAAGgtttcctttc ... ttgctttcagGTGTTGCTGTCAATCTGTTCCCTGCTGACTGATCCGAACCCTGATGATCCT
EST: gi|88471653|gb|CI408924.1|CI408924
EST:     GCCTTGACATCCTTAAGGACCAATGGAGCCCAGCACTAACCATTTCCAAG                         GTGTTGCTGTCAATCTGTTCCCTGCTGACTGATCCGAACCCTGATGATCCT
genomic: GCCTTGACATCCTTAAGGACCAATGGAGCCCAGCACTAACCATTTCCAAGgtttcctttc ... ttgctttcagGTGTTGCTGTCAATCTGTTCCCTGCTGACTGATCCGAACCCTGATGATCCT
EST: gi|25798773|gb|CA754667.1|CA754667
EST:     GCCTTGACATCCTTAAGGACCAATGGAGCCCAGCACTAACCATTTCCAAG                         GTGTTGCTGTCAATCTGTTCCCTGCTGACTGATCCGAACCCTGATGATCCT
genomic: GCCTTGACATCCTTAAGGACCAATGGAGCCCAGCACTAACCATTTCCAAGgtttcctttc ... ttgctttcagGTGTTGCTGTCAATCTGTTCCCTGCTGACTGATCCGAACCCTGATGATCCT
EST: gi|117238030|gb|CT862028.1|CT862028
EST:     GCCTTGACATCCTTAAGGACCAATGGAGCCCAGCACTAACCATTTCCAAG                         GTGTTGCTGTCAATCTGTTCCCTGCTGACTGATCCGAACCCTGATGATCCT
genomic: GCCTTGACATCCTTAAGGACCAATGGAGCCCAGCACTAACCATTTCCAAGgtttcctttc ... ttgctttcagGTGTTGCTGTCAATCTGTTCCCTGCTGACTGATCCGAACCCTGATGATCCT
EST: gi|88458849|gb|CI555530.1|CI555530
EST:     GCCTTGACATCCTTAAGGACCAATGGAGCCCAGCACTAACCATTTCCAAG                         GTGTTGCTGTCAATCTGTTCCCTGCTGACTGATCCGAACCCTGATGATCCT
genomic: GCCTTGACATCCTTAAGGACCAATGGAGCCCAGCACTAACCATTTCCAAGgtttcctttc ... ttgctttcagGTGTTGCTGTCAATCTGTTCCCTGCTGACTGATCCGAACCCTGATGATCCT
EST: gi|55431332|gb|CV728680.1|CV728680
EST:     GCCTTGACATCCTTAAGGACCAATGGAGCCCAGCACTAACCATTTCCAAG                         GTGTTGCTGTCAATCTGTTCCCTGCTGACTGATCCGAACCCTGATGATCCT
genomic: GCCTTGACATCCTTAAGGACCAATGGAGCCCAGCACTAACCATTTCCAAGgtttcctttc ... ttgctttcagGTGTTGCTGTCAATCTGTTCCCTGCTGACTGATCCGAACCCTGATGATCCT
EST: gi|88510155|gb|CI437661.1|CI437661
EST:     GCCTTGACATCCTTAAGGACCAATGGAGCCCAGCACTAACCATTTCCAAG                         GTGTTGCTGTCAATCTGTTCCCTGCTGACTGATCCGAACCCTGATGATCCT
genomic: GCCTTGACATCCTTAAGGACCAATGGAGCCCAGCACTAACCATTTCCAAGgtttcctttc ... ttgctttcagGTGTTGCTGTCAATCTGTTCCCTGCTGACTGATCCGAACCCTGATGATCCT
EST: gi|58594014|gb|CF992322.1|CF992322
EST:     GCCTTGACATCCTTAAGGACCAATGGAGCCCAGCACTAACCATTTCCAAG                         GTGTTGCTGTCAATCTGTTCCCTGCTGACTGATCCGAACCCTGATGATCCT
genomic: GCCTTGACATCCTTAAGGACCAATGGAGCCCAGCACTAACCATTTCCAAGgtttcctttc ... ttgctttcagGTGTTGCTGTCAATCTGTTCCCTGCTGACTGATCCGAACCCTGATGATCCT
EST: gi|58671444|gb|CK060130.1|CK060130
EST:     GCCTTGACATCCTTAAGGACCAATGGAGCCCAGCACTAACCATTTCCAAG                         GTGTTGCTGTCAATCTGTTCCCTGCTGACTGATCCGAACCCTGATGATCCT
genomic: GCCTTGACATCCTTAAGGACCAATGGAGCCCAGCACTAACCATTTCCAAGgtttcctttc ... ttgctttcagGTGTTGCTGTCAATCTGTTCCCTGCTGACTGATCCGAACCCTGATGATCCT
EST: gi|3759930|gb|C97188.1|C97188
EST:     CCCTTGACATCCTTAAGGACCAATGGAGCCCAGNACTAACCATTTCCAAG                         GTGTTGCTGTCAATCTGTTCC-TGCT
genomic: CC-TTGACATCCTTAAGGACCAATGGAGCCCAGCACTAACCATTTCCAAGgtttcctttc ... ttgctttcagGTGTTGCTGTCAATCTGTTCCCTGCT
EST: gi|58591111|gb|CF989419.1|CF989419
EST:     GCCTTGACATCCTTAAGGACCAATGGAGCCCAGCACTAACCATTTCCAAG                         GTGTTGCTGTCAATCTGTTCCCTGCTGACTGATCCGAACCCTGATGATCCT
genomic: GCCTTGACATCCTTAAGGACCAATGGAGCCCAGCACTAACCATTTCCAAGgtttcctttc ... ttgctttcagGTGTTGCTGTCAATCTGTTCCCTGCTGACTGATCCGAACCCTGATGATCCT
EST: gi|2310784|gb|C26939.1|C26939
EST:     CCTTGACATCCTTAAGGGACCAATGGAGCCCAGAACTAACCATTTCCAAG                         GTGTTGCTGTCAATCTGT-CCCTGCTGACTGATCCGAACC-TGATGATCCT
genomic: CCTTGACATCCTTAAGG-ACCAATGGAGCCCAGCACTAACCATTTCCAAGgtttcctttc ... ttgctttcagGTGTTGCTGTCAATCTGTTCCCTGCTGACTGATCCGAACCCTGATGATCCT
EST: gi|88377844|gb|CI637978.1|CI637978
EST:     GCCTTGACATCCTTAAGGACCAATGGAGCCCAGCACTAACCATTTCCAAG                         GTGTTGCTGTCAATCTGTTCCCTGCTGACTGATCCGAACCCTGATGATCCT
genomic: GCCTTGACATCCTTAAGGACCAATGGAGCCCAGCACTAACCATTTCCAAGgtttcctttc ... ttgctttcagGTGTTGCTGTCAATCTGTTCCCTGCTGACTGATCCGAACCCTGATGATCCT
EST: gi|66913588|gb|CX100436.1|CX100436
EST:     GCCTTGACATCCTTAAGGACCAATGGAGCCCAGCACTAACCATTTCCAAG                         GTGTTGCTGTCAATCTGTTCCCTGCTGACTGATCCGAACCCTGATGATCCT
genomic: GCCTTGACATCCTTAAGGACCAATGGAGCCCAGCACTAACCATTTCCAAGgtttcctttc ... ttgctttcagGTGTTGCTGTCAATCTGTTCCCTGCTGACTGATCCGAACCCTGATGATCCT
EST: gi|58591699|gb|CF990007.1|CF990007
EST:     GCCTTGACATCCTTAAGGACCAATGGAGCCCAGCACTAACCA-TGCCAAG                         GTGTTGCTGTCAATCTGTTCCCTGCTGACTGATCCGAACCCTGATGATCCT
genomic: GCCTTGACATCCTTAAGGACCAATGGAGCCCAGCACTAACCATTTCCAAGgtttcctttc ... ttgctttcagGTGTTGCTGTCAATCTGTTCCCTGCTGACTGATCCGAACCCTGATGATCCT
EST: gi|58597143|gb|CK007671.1|CK007671
EST:     GCCTTGACATCCTTAAGGACCAATGGAGCCCAGCACTAACCATTTCCAAG                         GTGTTGCTGTCAATCTGTTCCCTGCTGACTGATCCGAACCCTGATGATCCT
genomic: GCCTTGACATCCTTAAGGACCAATGGAGCCCAGCACTAACCATTTCCAAGgtttcctttc ... ttgctttcagGTGTTGCTGTCAATCTGTTCCCTGCTGACTGATCCGAACCCTGATGATCCT
EST: gi|86418310|gb|CI032519.1|CI032519
EST:     GCCTTGACATCCTTAAGGACCAATGGAGCCCAGCACTAACCATTTCCAAG                         GTGTTGCTGTCAATCTGTTCCCTGCTGACTGATCCGAACCCTGATGATCCT
genomic: GCCTTGACATCCTTAAGGACCAATGGAGCCCAGCACTAACCATTTCCAAGgtttcctttc ... ttgctttcagGTGTTGCTGTCAATCTGTTCCCTGCTGACTGATCCGAACCCTGATGATCCT
EST: gi|88308997|gb|CI654419.1|CI654419
EST:     GCCTTGACATCCTTAAGGACCAATGGAGCCCAGCACTAACCATTTCCAAG                         GTGTTGCTGTCAATCTGTTCCCTGCTGACTGATCCGAACCCTGATGATCCT
genomic: GCCTTGACATCCTTAAGGACCAATGGAGCCCAGCACTAACCATTTCCAAGgtttcctttc ... ttgctttcagGTGTTGCTGTCAATCTGTTCCCTGCTGACTGATCCGAACCCTGATGATCCT
EST: gi|88984239|gb|CI020156.1|CI020156
EST:     GCCTTGACATCCTTAAGGACCAATGGAGCCCAGCACTAACCATTTCCAAG                         GTGTTGCTGTCAATCTGTTCCCTGCTGACTGATCCGAACCCTGATGATCCT
genomic: GCCTTGACATCCTTAAGGACCAATGGAGCCCAGCACTAACCATTTCCAAGgtttcctttc ... ttgctttcagGTGTTGCTGTCAATCTGTTCCCTGCTGACTGATCCGAACCCTGATGATCCT
EST: gi|89190159|gb|CI392209.1|CI392209
EST:     GCCTTGACATCCTTAAGGACCAATGGAGCCCAGCACTAACCATTTCCAAG                         GTGTTGCTGTCAATCTGTTCCCTGCTGACTGATCCGAACCCTGATGATCCT
genomic: GCCTTGACATCCTTAAGGACCAATGGAGCCCAGCACTAACCATTTCCAAGgtttcctttc ... ttgctttcagGTGTTGCTGTCAATCTGTTCCCTGCTGACTGATCCGAACCCTGATGATCCT
EST: gi|163928906|gb|EG709759.1|EG709759
EST:     GCCTTGACATCCTTAAGGACCAATGGAGCCCAGCACTAACCATTTCCAAG                         GTGTTGCTGTCAATCTGTTCCCTGCTGACTGATCCGAACCCTGATGATCCT
genomic: GCCTTGACATCCTTAAGGACCAATGGAGCCCAGCACTAACCATTTCCAAGgtttcctttc ... ttgctttcagGTGTTGCTGTCAATCTGTTCCCTGCTGACTGATCCGAACCCTGATGATCCT
EST: gi|88835021|gb|CI370324.1|CI370324
EST:     GCCTTGACATCCTTAAGGACCAATGGAGCCCAGCACTAACCATTTCCAAG                         GTGTGGCTGTCAATCTGTTCCCTGCTGACTGATCCGAACCCTGATGATCCT
genomic: GCCTTGACATCCTTAAGGACCAATGGAGCCCAGCACTAACCATTTCCAAGgtttcctttc ... ttgctttcagGTGTTGCTGTCAATCTGTTCCCTGCTGACTGATCCGAACCCTGATGATCCT
EST: gi|58603424|gb|CK013952.1|CK013952
EST:     GCCTTGACATCCTTAAGGACCAATGGAGCCCAGCACTAACCATTTCCAAG                         GTGTTGCTGTCAATCTGTTCCCTGCTGACTGATCCGAACCCTGATGATCCT
genomic: GCCTTGACATCCTTAAGGACCAATGGAGCCCAGCACTAACCATTTCCAAGgtttcctttc ... ttgctttcagGTGTTGCTGTCAATCTGTTCCCTGCTGACTGATCCGAACCCTGATGATCCT
EST: gi|88510362|gb|CI437868.1|CI437868
EST:     GCCTTGACATCCTTAAGGACCAATGGAGCCCAGCACTAACCATTTCCAAG                         GTGTTGCTGTCAATCTGTTCCCTGCTGACTGATCCGAACCCTGATGATCCT
genomic: GCCTTGACATCCTTAAGGACCAATGGAGCCCAGCACTAACCATTTCCAAGgtttcctttc ... ttgctttcagGTGTTGCTGTCAATCTGTTCCCTGCTGACTGATCCGAACCCTGATGATCCT
EST: gi|55438246|gb|CV732418.1|CV732418
EST:     GCCTTGACATCCTTAAGGACCAATGGAGCCCAGCACTAACCATTTCCAAG                         GTGTTGCTGTCAATCTGTTCCCTGCTGACTGATCCGAACCCTGATGATCCT
genomic: GCCTTGACATCCTTAAGGACCAATGGAGCCCAGCACTAACCATTTCCAAGgtttcctttc ... ttgctttcagGTGTTGCTGTCAATCTGTTCCCTGCTGACTGATCCGAACCCTGATGATCCT
EST: gi|88286705|gb|CI517816.1|CI517816
EST:     GCCTTGACATCCTTAAGGACCAATGGAGCCCAGCACTAACCATTTCCAAG                         GTGTTGCTGTCAATCTGTTCCCTGCTGACTGATCCGAACCCTGATGATCCT
genomic: GCCTTGACATCCTTAAGGACCAATGGAGCCCAGCACTAACCATTTCCAAGgtttcctttc ... ttgctttcagGTGTTGCTGTCAATCTGTTCCCTGCTGACTGATCCGAACCCTGATGATCCT
EST: gi|88491685|gb|CI428957.1|CI428957
EST:     GCCTTGACATCCTTAAGGACCAATGGAGCCCAGCACTAACCATTTCCAAG                         GTGTTGCTGTCAATCTGTTCCCTGCTGACTGATCCGAACCCTGATGATCCT
genomic: GCCTTGACATCCTTAAGGACCAATGGAGCCCAGCACTAACCATTTCCAAGgtttcctttc ... ttgctttcagGTGTTGCTGTCAATCTGTTCCCTGCTGACTGATCCGAACCCTGATGATCCT
EST: gi|88415846|gb|CI535993.1|CI535993
EST:     GCCTTGACATCCTTAAGGACCAATGGAGCCCAGCACTAACCATTTCCAAG                         GTGTTGCTGTCAATCTGTTCCCTGCTGACTGATCCGAACCCTGATGATCCT
genomic: GCCTTGACATCCTTAAGGACCAATGGAGCCCAGCACTAACCATTTCCAAGgtttcctttc ... ttgctttcagGTGTTGCTGTCAATCTGTTCCCTGCTGACTGATCCGAACCCTGATGATCCT
EST: gi|109712001|gb|CI029171.1|CI029171
EST:     GCCTTGACATCCTTAAGGACCAATGGAGCCCAGCACTAACCATTTCCAAG                         GTGTTGCTGTCAATCTGTTCCCTGCTGACTGATCCGAACCCTGATGATCCT
genomic: GCCTTGACATCCTTAAGGACCAATGGAGCCCAGCACTAACCATTTCCAAGgtttcctttc ... ttgctttcagGTGTTGCTGTCAATCTGTTCCCTGCTGACTGATCCGAACCCTGATGATCCT
EST: gi|27577273|gb|CA999967.1|CA999967
EST:     GCCTTGACATCCTTAAGGACCAATGGAGCCCAGCACTAACCATTTCCAAG                         GTGTTGCTGTCAATCTGTTCCCTGCTGACTGATCCGAACCCTGATGATCCT
genomic: GCCTTGACATCCTTAAGGACCAATGGAGCCCAGCACTAACCATTTCCAAGgtttcctttc ... ttgctttcagGTGTTGCTGTCAATCTGTTCCCTGCTGACTGATCCGAACCCTGATGATCCT
EST: gi|55413329|gb|CV725705.1|CV725705
EST:     GCCTTGACATCCTTAAGGACCAATGGAGCC-AGCACTAACCATTTCCAAG                         GTGTTGCTGTCAATCTGTTCCCTGCTGACTGATCCGAACCCTGATGATCCT
genomic: GCCTTGACATCCTTAAGGACCAATGGAGCCCAGCACTAACCATTTCCAAGgtttcctttc ... ttgctttcagGTGTTGCTGTCAATCTGTTCCCTGCTGACTGATCCGAACCCTGATGATCCT
EST: gi|38476445|gb|CF960578.1|CF960578
EST:     GCCTTGACATCCTTAAGGACCAATGGAGCCCAGCACTAACCGGGTCCAAG                         GTGTTGCTGTCAATCTGTTCCCTGCTGACTGATCCGAACCCTGATGATCCT
genomic: GCCTTGACATCCTTAAGGACCAATGGAGCCCAGCACTAACCATTTCCAAGgtttcctttc ... ttgctttcagGTGTTGCTGTCAATCTGTTCCCTGCTGACTGATCCGAACCCTGATGATCCT
EST: gi|3759748|gb|C97006.1|C97006
EST:     GCCTTGACATCCTTAAGGACCAATGGAGCCCAGCACTAACCATTTCCAAG                         GTGTTGCTGTCAATCTGTTCCCTGCTGACTGATCCGAACCCTGATGATCCT
genomic: GCCTTGACATCCTTAAGGACCAATGGAGCCCAGCACTAACCATTTCCAAGgtttcctttc ... ttgctttcagGTGTTGCTGTCAATCTGTTCCCTGCTGACTGATCCGAACCCTGATGATCCT
EST: gi|58591683|gb|CF989991.1|CF989991
EST:     GCCTTGACATCCTTAAGGACCAATGGAGCCCAGCACTAACCATTTCCAAG                         GTGTTGCTGTCAATCTGTTCCCTGCTGACTGATCCGAACCCTGATGATCCT
genomic: GCCTTGACATCCTTAAGGACCAATGGAGCCCAGCACTAACCATTTCCAAGgtttcctttc ... ttgctttcagGTGTTGCTGTCAATCTGTTCCCTGCTGACTGATCCGAACCCTGATGATCCT
EST: gi|38472298|gb|CF956429.1|CF956429
EST:     GCCTTGACATCCTTAAGGACCAATGGAGCCCAGCACTAACCATTTCCAAG                         GTGTTGCTGTCAATCTGTTCCCTGCTGACTGATCCGAACCCTGATGATCCT
genomic: GCCTTGACATCCTTAAGGACCAATGGAGCCCAGCACTAACCATTTCCAAGgtttcctttc ... ttgctttcagGTGTTGCTGTCAATCTGTTCCCTGCTGACTGATCCGAACCCTGATGATCCT
EST: gi|7652069|gb|AU063027.2|AU063027
EST:     GGAGCCCAGCACTAACCATTTCCAAG                         GTGTTGCTGTCAATCTGTTCCCTGCTGACTGATCCGAACCCTGATGATCCT
genomic: GGAGCCCAGCACTAACCATTTCCAAGgtttcctttc ... ttgctttcagGTGTTGCTGTCAATCTGTTCCCTGCTGACTGATCCGAACCCTGATGATCCT
EST: gi|55408408|gb|CV720784.1|CV720784
EST:     GCCTTGACATCCTTAAGGACCAATGGAGCCCAGCACTAACCATTTCCAAG                         GTGTTGCTGTCAATCTGTTCCCTGCTGACTGATCCGAACCCTGATGATCCT
genomic: GCCTTGACATCCTTAAGGACCAATGGAGCCCAGCACTAACCATTTCCAAGgtttcctttc ... ttgctttcagGTGTTGCTGTCAATCTGTTCCCTGCTGACTGATCCGAACCCTGATGATCCT
EST: gi|58672051|gb|CK060737.1|CK060737
EST:     GCCTTGACATCCTTAAGGACCAATGGAGCCCAGCACTAACCATTTCCAAG                         GTGTTGCTGTCAATCTGTTCCCTGCTGACTGATCCGAACCCTGATGATCCT
genomic: GCCTTGACATCCTTAAGGACCAATGGAGCCCAGCACTAACCATTTCCAAGgtttcctttc ... ttgctttcagGTGTTGCTGTCAATCTGTTCCCTGCTGACTGATCCGAACCCTGATGATCCT
EST: gi|58588732|gb|CF987040.1|CF987040
EST:     GCCTTGACATCCTTAAGGACCAATGGAGCCCAGCACTAACCATTTCCAAG                         GTGTTGCTGTCAATCTGTTCCCTGCTGACTGATCCGAACCCTGATGATCCT
genomic: GCCTTGACATCCTTAAGGACCAATGGAGCCCAGCACTAACCATTTCCAAGgtttcctttc ... ttgctttcagGTGTTGCTGTCAATCTGTTCCCTGCTGACTGATCCGAACCCTGATGATCCT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 75 (upstream exon), 66 (downstream exon)
Score: 374

GTTTCGCACCAAGGTTTTCCATCCAAACATCAACAGCAACGGGAGCATTTGCCTTGACATCCTTAAGGACCAATGGAGCCCAGCACTAACCATTTCCAAGgtttcctttc ... ttgctttcagGTGTTGCTGTCAATCTGTTCCCTGCTGACTGATCCGAACCCTGATGATCCTCTGGTCCCTGAGATCGCCCACATGTACAAGACAGATAGGCACAAGTACG




<











<


<