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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAAGAATTATGCTGATGCAAGCCACGTTTCTGCTGTCATTTTGGGTGGAGGCACTGGAGTTCAACTCTTTCCTCTGACAAGCACAAGGGCTACCCCCGCTgtaagaaagtgaaacactatttatatctaatgttgactactgtactgtgcagataatagatttttaattgtggataacatacttagaacttaagaaaaag...

Basic information

species Oryza sativa
transcript LOC_Os01g44220.3
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|1631746|gb|C19475.1|C19475
EST:     GCACTGGAGTTCAACTCTTTCCTCTGACAAGCACAAGGGCTACCCCCGCT                         GTTCCTGTTGGAGGATGTTACAGGCTTATTGACATCCCTATGGAGCAATTG
genomic: GCACTGGAGTTCAACTCTTTCCTCTGACAAGCACAAGGGCTACCCCCGCTgtaagaaagt ... tattacttagGTTCCTGTTGGAGGATGTTACAGGCTTATTGACATCCCTATG-AGCAATTG
EST: gi|88461692|gb|CI695535.1|CI695535
EST:     GCACTGGAGTTCAACTCTTTCCTCTGACAAGCACAAGGGCTACCCCCGCT                         GTTCCTGTTGGAGGATGTTACAGGCT
genomic: GCACTGGAGTTCAACTCTTTCCTCTGACAAGCACAAGGGCTACCCCCGCTgtaagaaagt ... tattacttagGTTCCTGTTGGAGGATGTTACAGGCT
EST: gi|88378739|gb|CI681555.1|CI681555
EST:     GCACTGGAGTTCAACTCTTTCCTCTGACAAGCACAAGGGCTACCCCCGCT                         GTTCCTGTTGGAGGATGTTACAGGCTTATTGACATC
genomic: GCACTGGAGTTCAACTCTTTCCTCTGACAAGCACAAGGGCTACCCCCGCTgtaagaaagt ... tattacttagGTTCCTGTTGGAGGATGTTACAGGCTTATTGACATC
EST: gi|88321573|gb|CI672705.1|CI672705
EST:     GCACTGGAGTTCAACTCTTTCCTCTGACAAGCACAAGGGCTACCCCCGCT                         GTTCCTGTTGGAGGA
genomic: GCACTGGAGTTCAACTCTTTCCTCTGACAAGCACAAGGGCTACCCCCGCTgtaagaaagt ... tattacttagGTTCCTGTTGGAGGA
EST: gi|88582923|gb|CI699388.1|CI699388
EST:     GCACTGGAGTTCAACTCTTTCCTCTGACAAGCACAAGGGCTACCCCCGCT                         GTTCCTGTTGGAGGATGTTACAGGCTTATTGACATC
genomic: GCACTGGAGTTCAACTCTTTCCTCTGACAAGCACAAGGGCTACCCCCGCTgtaagaaagt ... tattacttagGTTCCTGTTGGAGGATGTTACAGGCTTATTGACATC
EST: gi|88586455|gb|CI704156.1|CI704156
EST:     GCACTGGAGTTCAACTCTTTCCTCTGACAAGCACAAGGGCTACCCCCGCT                         GTTCCTGTTGGAGGATGTTACAGGCTTATTG
genomic: GCACTGGAGTTCAACTCTTTCCTCTGACAAGCACAAGGGCTACCCCCGCTgtaagaaagt ... tattacttagGTTCCTGTTGGAGGATGTTACAGGCTTATTG
EST: gi|88578267|gb|CI687187.1|CI687187
EST:     GCACTGGAGTTCAACTCTTTCCTCTGACAAGCACAAGGGCTACCCCCGCT                         GTTCCTGTTGGAGGAT
genomic: GCACTGGAGTTCAACTCTTTCCTCTGACAAGCACAAGGGCTACCCCCGCTgtaagaaagt ... tattacttagGTTCCTGTTGGAGGAT
EST: gi|88313641|gb|CI671770.1|CI671770
EST:     GCACTGGAGTTCAACTCTTTCCTCTGACAAGCACAAGGGCTACCCCCGCT                         GTTCCTGTTGGAGGA
genomic: GCACTGGAGTTCAACTCTTTCCTCTGACAAGCACAAGGGCTACCCCCGCTgtaagaaagt ... tattacttagGTTCCTGTTGGAGGA
EST: gi|88369721|gb|CI680389.1|CI680389
EST:     GCACTGGAGTTCAACTCTTTCCTCTGACAAGCACAAGGGCTACCCCCGCT                         GTTCCTGTTGGAGGATGTTACAGGCTTA
genomic: GCACTGGAGTTCAACTCTTTCCTCTGACAAGCACAAGGGCTACCCCCGCTgtaagaaagt ... tattacttagGTTCCTGTTGGAGGATGTTACAGGCTTA
EST: gi|88379094|gb|CI681927.1|CI681927
EST:     GCACTGGAGTTCAACTCTTTCCTCTGACAAGCACAAGGGCTACCCCCGCT                         GTTCCTGTTGGAGGATGTTACAGGCTTATTGACATCC
genomic: GCACTGGAGTTCAACTCTTTCCTCTGACAAGCACAAGGGCTACCCCCGCTgtaagaaagt ... tattacttagGTTCCTGTTGGAGGATGTTACAGGCTTATTGACATCC
EST: gi|88310654|gb|CI672515.1|CI672515
EST:     GCACTGGAGTTCAACTCTTTCCTCTGACAAGCACAAGGGCTACCCCCGCT                         GTTCCTGTTGGAGGATGTTACAGGCT
genomic: GCACTGGAGTTCAACTCTTTCCTCTGACAAGCACAAGGGCTACCCCCGCTgtaagaaagt ... tattacttagGTTCCTGTTGGAGGATGTTACAGGCT
EST: gi|88578726|gb|CI687673.1|CI687673
EST:     GCACTGGAGTTCAACTCTTTCCTCTGACAAGCACAAGGGCTACCCCCGCT                         GTTCCTGTTGGAGGATGTTACAGGCTTATTGACAT
genomic: GCACTGGAGTTCAACTCTTTCCTCTGACAAGCACAAGGGCTACCCCCGCTgtaagaaagt ... tattacttagGTTCCTGTTGGAGGATGTTACAGGCTTATTGACAT
EST: gi|88310738|gb|CI672605.1|CI672605
EST:     GCACTGGAGTTCAACTCTTTCCTCTGACAAGCACAAGGGCTACCCCCGCT                         GTTCCTGTTGGAGGATGTTACAGGCTTA
genomic: GCACTGGAGTTCAACTCTTTCCTCTGACAAGCACAAGGGCTACCCCCGCTgtaagaaagt ... tattacttagGTTCCTGTTGGAGGATGTTACAGGCTTA
EST: gi|88851762|gb|CI674964.1|CI674964
EST:     GCACTGGAGTTCAACTCTTTCCTCTGACAAGCACAAGGGCTACCCCCGCT                         GTTCCTGTTGGAGGATGTTACAGGCTTATTGACATCCCTATGAGCAATTGC
genomic: GCACTGGAGTTCAACTCTTTCCTCTGACAAGCACAAGGGCTACCCCCGCTgtaagaaagt ... tattacttagGTTCCTGTTGGAGGATGTTACAGGCTTATTGACATCCCTATGAGCAATTGC
EST: gi|88331522|gb|CI675859.1|CI675859
EST:     GCACTGGAGTTCAACTCTTTCCTCTGACAAGCACAAGGGCTACCCCCGCT                         GTTCCTGTTGGAGGATGTTACAGGCT
genomic: GCACTGGAGTTCAACTCTTTCCTCTGACAAGCACAAGGGCTACCCCCGCTgtaagaaagt ... tattacttagGTTCCTGTTGGAGGATGTTACAGGCT
EST: gi|88577151|gb|CI673709.1|CI673709
EST:     GCACTGGAGTTCAACTCTTTCCTCTGACAAGCACAAGGGCTACCCCCGNT                         GTTCCTGTTGGA
genomic: GCACTGGAGTTCAACTCTTTCCTCTGACAAGCACAAGGGCTACCCCCGCTgtaagaaagt ... tattacttagGTTCCTGTTGGA
EST: gi|88959416|gb|CI685897.1|CI685897
EST:     GCACTGGAGTTCAACTCTTTCCTCTGACAAGCACAAGGGCTACCCCCGCT                         GTTCCTGTTGGA
genomic: GCACTGGAGTTCAACTCTTTCCTCTGACAAGCACAAGGGCTACCCCCGCTgtaagaaagt ... tattacttagGTTCCTGTTGGA
EST: gi|88313443|gb|CI671561.1|CI671561
EST:     GCACTGGAGTTCAACTCTTTCCTCTGACAAGCACAAGGGCTACCCCCGCT                         GTTCCTGTTGGAGGATGT
genomic: GCACTGGAGTTCAACTCTTTCCTCTGACAAGCACAAGGGCTACCCCCGCTgtaagaaagt ... tattacttagGTTCCTGTTGGAGGATGT
EST: gi|88321531|gb|CI672660.1|CI672660
EST:     GCACTGGAGTTCAACTCTTTCCTCTGACAAGCACAAGGGCTACCCCCGCT                         GTTCCTGTTGGAGGATGTTACAGGCTTATTGA
genomic: GCACTGGAGTTCAACTCTTTCCTCTGACAAGCACAAGGGCTACCCCCGCTgtaagaaagt ... tattacttagGTTCCTGTTGGAGGATGTTACAGGCTTATTGA
EST: gi|88576805|gb|CI673331.1|CI673331
EST:     GCACTGGAGTTCAACTCTTTCCTCTGACAAGCACAAGGGCTACCCCCGCT                         GTTCCTGTTGGAG
genomic: GCACTGGAGTTCAACTCTTTCCTCTGACAAGCACAAGGGCTACCCCCGCTgtaagaaagt ... tattacttagGTTCCTGTTGGAG
EST: gi|88414466|gb|CI691632.1|CI691632
EST:     GCACTGGAGTTCAACTCTTTCCTCTGACAAGCACAAGGGCTACCCCCGCT                         GTTCCTGTTGGAGGATGTTACAGGCTTATTGACATCCCTATGAGCAATTGC
genomic: GCACTGGAGTTCAACTCTTTCCTCTGACAAGCACAAGGGCTACCCCCGCTgtaagaaagt ... tattacttagGTTCCTGTTGGAGGATGTTACAGGCTTATTGACATCCCTATGAGCAATTGC
EST: gi|88451782|gb|CI694552.1|CI694552
EST:     GCACTGGAGTTCAACTCTTTCCTCTGACAAGCACAAGGGCTACCCCCGCT                         GTTCCTGTTGGAGGAT
genomic: GCACTGGAGTTCAACTCTTTCCTCTGACAAGCACAAGGGCTACCCCCGCTgtaagaaagt ... tattacttagGTTCCTGTTGGAGGAT
EST: gi|88369747|gb|CI680418.1|CI680418
EST:     GCACTGGAGTTCAACTCTTTCCTCTGACAAGCACAAGGGCTACCCCCGCT                         GTTCCTGTTGGAGGATGTTACAG
genomic: GCACTGGAGTTCAACTCTTTCCTCTGACAAGCACAAGGGCTACCCCCGCTgtaagaaagt ... tattacttagGTTCCTGTTGGAGGATGTTACAG
EST: gi|66922783|gb|CX109631.1|CX109631
EST:     GCACTGGAGTTCAACTCTTTCCTCTGACAAGCACAAGGGCTACCCCCGCT                         GTTCCTGTTGGAGGATGTTACAGGCTTATTGACATCCCTATGAGCAATTGC
genomic: GCACTGGAGTTCAACTCTTTCCTCTGACAAGCACAAGGGCTACCCCCGCTgtaagaaagt ... tattacttagGTTCCTGTTGGAGGATGTTACAGGCTTATTGACATCCCTATGAGCAATTGC
EST: gi|88361961|gb|CI682139.1|CI682139
EST:     GCACTGGAGTTCAACTCTTTCCTCTGACAAGCACAAGGGCTACCCCCGCT                         GTTCCTGTTGGAGGATGTTACAGGCTTATTGACATCCCTATGAGC
genomic: GCACTGGAGTTCAACTCTTTCCTCTGACAAGCACAAGGGCTACCCCCGCTgtaagaaagt ... tattacttagGTTCCTGTTGGAGGATGTTACAGGCTTATTGACATCCCTATGAGC
EST: gi|88371876|gb|CI681387.1|CI681387
EST:     GCACTGGAGTTCAACTCTTTCCTCTGACAAGCACAAGGGCTACCCCCGCT                         GTTCCTGTTGGAGGATGTTACAGGCTTA
genomic: GCACTGGAGTTCAACTCTTTCCTCTGACAAGCACAAGGGCTACCCCCGCTgtaagaaagt ... tattacttagGTTCCTGTTGGAGGATGTTACAGGCTTA
EST: gi|88463678|gb|CI696154.1|CI696154
EST:     GCACTGGAGTTCAACTCTTTCCTCTGACAAGCACAAGGGCTACCCCCGCT                         GTTCCTGTTGGAGGATGTTACAGGCTTAT
genomic: GCACTGGAGTTCAACTCTTTCCTCTGACAAGCACAAGGGCTACCCCCGCTgtaagaaagt ... tattacttagGTTCCTGTTGGAGGATGTTACAGGCTTAT