Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGCATGCACCCGGAGTGGCAGGATCGCGCCAGGGAGGAGATTCTGCAGGTCTTTGGGCGAAACAAACCTGATATCAATGGCGTTAGCCGCCTGAAAGTCgtgagttgtgcactctgccccgtaacgcaatttttgcaccgttttctgcaaaagatgttcacgatttgatgatcgatggagccgatctttggcag

Basic information

species Oryza sativa
transcript LOC_Os01g43700.1
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86503211|gb|CI145844.1|CI145844
EST:     ATATCAATGGCGTTAGCCGCCTGAAAGTC                         GTGACCATGGTGCTGCACGAGGTGCTGCGCCTGTACCCGCCGGTGGTGATG
genomic: ATATCAATGGCGTTAGCCGCCTGAAAGTCgtgagttgtg ... tctttggcagGTGACCATGGTGCTGCACGAGGTGCTGCGCCTGTACCCGCCGGTGGTGATG
EST: gi|218485416|gb|FG945027.1|FG945027
EST:     TCTTTGGGCGAAACAAACCTGATATCAATGGCGTTAGCCGCCTGAAAGTC                         GTGACCATGGTGCTGCACGAGGTGCTGCGCCTGTACCCGCCGGTGGTGATG
genomic: TCTTTGGGCGAAACAAACCTGATATCAATGGCGTTAGCCGCCTGAAAGTCgtgagttgtg ... tctttggcagGTGACCATGGTGCTGCACGAGGTGCTGCGCCTGTACCCGCCGGTGGTGATG
EST: gi|5039082|gb|AU071192.1|AU071192
EST:     CTTTGGGCGAAACAAACCTGATATCAATGGCGTTA--CGNCCTGAAAGTC                         GTGACCATGGTGCTGCACGAGGTGCTGCGCCTGTACCCGCCGGTGGTGATG
genomic: CTTTGGGCGAAACAAACCTGATATCAATGGCGTTAGCCG-CCTGAAAGTCgtgagttgtg ... tctttggcagGTGACCATGGTGCTGCACGAGGTGCTGCGCCTGTACCCGCCGGTGGTGATG