1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
GTTACTGCATACTCAGATGGCCAAGTGAAGGTTTATGAGCTCTTGGACTCGTTGGAATTAGACAAGTGGCAGCTTCAGgtttatctaacttctgttcacatttaccaatgttctcaatcatttagtttggttcctatatattccttgctaatctaaactagcaaacccatttcttccattgaatagtgctatagtcatctgatctgtttaacaatagcaattactaagtaataacaacatttcag
species | Oryza sativa |
transcript | LOC_Os01g43250.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: AGGTTTATGAGCTCTTGGACTCGTTGGAATTAGACAAGTGGCAGCTTCAG GCGGAGTTCCAGAACATTACAGATCCTGTTTCCCGATCTGGGAAGCCAGCAEST: gi|29658632|gb|CB654907.1|CB654907
genomic: AGGTTTATGAGCTCTTGGACTCGTTGGAATTAGACAAGTGGCAGCTTCAGgtttatctaa ... aacatttcagGCGGAGTTCCAGAACATTACAGATCCTGTTTCCCGATCTGGGAAGCCAGCA
EST: AGGTTTATGAGCTCTTGGACTCGTTGGAATTAGACAAGTGGCAGCTTCAG GCGGAGTTCCAGAACATTACAGATCCTGTTTCCCGATCTGGGAAGCCAGCAEST: gi|86908206|gb|CI300676.1|CI300676
genomic: AGGTTTATGAGCTCTTGGACTCGTTGGAATTAGACAAGTGGCAGCTTCAGgtttatctaa ... aacatttcagGCGGAGTTCCAGAACATTACAGATCCTGTTTCCCGATCTGGGAAGCCAGCA
EST: AGGTTTATGAGCTCTTGGACTCGTTGGAATTAGACAAGTGGCAGCTTCAG GCGGAGTTCCAGAACATTACAGATCCTGTTTCCCGATCTGGGAAGCCAGCA
genomic: AGGTTTATGAGCTCTTGGACTCGTTGGAATTAGACAAGTGGCAGCTTCAGgtttatctaa ... aacatttcagGCGGAGTTCCAGAACATTACAGATCCTGTTTCCCGATCTGGGAAGCCAGCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTACTGCATACTCAGATGGCCAAGTGAAGGTTTATGAGCTCTTGGACTCGTTGGAATTAGACAAGTGGCAGCTTCAGgtttatctaacttctgttcacatttaccaatgttctcaatcatttagtttggttcctatatattccttgctaatctaaactagcaaacccatttcttccattgaatagtgctatagtcatctgatctgtttaacaatagcaattactaagtaataacaacatttcag
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