1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
GTTGACCCTAAAGCTACAGGTAGATCAACCCGGTTTGCTCAAGAAATCTTCTCGACTGTGCTGTTTACAATTGCTGTTGGACTAATGTGgtatgttcaacctgtcatgacactagttagttttatcaatatgttttcttctgccagtttacaacatgtttatgtcaatcttctttgtttgattatctta...
species | Oryza sativa |
transcript | LOC_Os01g43150.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: CAAGAAATCTTCTCGACTGTGCTGTTTACAATTGCTGTTGGACTAATGTG GGTAATGGGTGCTGCTGCTCTTCAAA-GTATATTGGTAGCEST: gi|29672102|gb|CB668377.1|CB668377
genomic: CAAGAAATCTTCTCGACTGTGCTGTTTACAATTGCTGTTGGACTAATGTGgtatgttcaa ... tattttgcagGGTAATGGGTGCTGCTGCTCTTCAAAAGTATATTGGTAGC
EST: CAAGAAATCTTCTCGACTGTGCTGTTTACAATTGCTGTTGGACTAATGTG GGTAATGGGTGCTGCTGCTCTTCAAAAGTATATTGGTAGCTTAGGTGGAAT
genomic: CAAGAAATCTTCTCGACTGTGCTGTTTACAATTGCTGTTGGACTAATGTGgtatgttcaa ... tattttgcagGGTAATGGGTGCTGCTGCTCTTCAAAAGTATATTGGTAGCTTAGGTGGAAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTGACCCTAAAGCTACAGGTAGATCAACCCGGTTTGCTCAAGAAATCTTCTCGACTGTGCTGTTTACAATTGCTGTTGGACTAATGTGgtatgttcaacctgtcatgacactagttagttttatcaatatgttttcttctgccagtttacaacatgtttatgtcaatcttctttgtttgattatctta
- - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT