1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GTCACTGGTGAGCCTGTTGGTGAAGTTAGAGCGGTCTCTGGCATGCACGAGAGGAAGGCTGAAATGGCCCGGTTTGCTGATGCGTTCATTGCACTGCCTGgtatgataatttagttgctactacgacgtcgtttgcagtgaattttttttgatgctgcatcctaaggatgcaaaatttgacactcttaatttgcgcgacag
species | Oryza sativa |
transcript | LOC_Os01g40630.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: GAGGAAGGCTGAAATGGCCCGGTTTGCTGATGCGTTCATTGCACTGCCTG GCGGCTACGGGACTCTTGAGGAGTTGCTTGAGGTCATCACCTGGGCCCAACEST: gi|29641391|gb|CB646398.1|CB646398
genomic: GAGGAAGGCTGAAATGGCCCGGTTTGCTGATGCGTTCATTGCACTGCCTGgtatgataat ... tgcgcgacagGCGGCTACGGGACTCTTGAGGAGTTGCTTGAGGTCATCACCTGGGCCCAAC
EST: GAGGAAGGCTGAAATGGCCCGGTTTGCTGATGCGTTCATTGCACTGCCTG GCGGCTACGGGACTCTTGAGGAGTTGCTTGAGGTCATCACCTGGGCCCAACEST: gi|29675216|gb|CB671491.1|CB671491
genomic: GAGGAAGGCTGAAATGGCCCGGTTTGCTGATGCGTTCATTGCACTGCCTGgtatgataat ... tgcgcgacagGCGGCTACGGGACTCTTGAGGAGTTGCTTGAGGTCATCACCTGGGCCCAAC
EST: GAGGAAGGCTGAAATGGCCCGGTTTGCTGATGCGTTCATTGCACTGCCTG GCGGCTACGGGACTCTTGAGGAGTTGCTTGAGGTCATCACCTGGGCCCAACEST: gi|38470631|gb|CF954762.1|CF954762
genomic: GAGGAAGGCTGAAATGGCCCGGTTTGCTGATGCGTTCATTGCACTGCCTGgtatgataat ... tgcgcgacagGCGGCTACGGGACTCTTGAGGAGTTGCTTGAGGTCATCACCTGGGCCCAAC
EST: GAGGAAGGCTGAAATGGCCCGGTTTGCTGATGCGTTCATTGCACTGCCTG GCGGCTACGGGACTCTTGAGGAGTTGCTTGAGGTCATCACCTGGGCCCAACEST: gi|25798342|gb|CA754303.1|CA754303
genomic: GAGGAAGGCTGAAATGGCCCGGTTTGCTGATGCGTTCATTGCACTGCCTGgtatgataat ... tgcgcgacagGCGGCTACGGGACTCTTGAGGAGTTGCTTGAGGTCATCACCTGGGCCCAAC
EST: GAGGAAGGCTGAAATGGCCCGGTTTGCTGATGCGTTCATTGCACTGCCTG GCGGCTACGGGACTCTTGAGGAGTTGCTTGAGGTCATCACCTGGGCCCAACEST: gi|29675215|gb|CB671490.1|CB671490
genomic: GAGGAAGGCTGAAATGGCCCGGTTTGCTGATGCGTTCATTGCACTGCCTGgtatgataat ... tgcgcgacagGCGGCTACGGGACTCTTGAGGAGTTGCTTGAGGTCATCACCTGGGCCCAAC
EST: GAGGAAGGCTGAAATGGCCCGGTTTGCTGATGCGTTCATTGCACTGCCTG GCGGCTACGGGACTCTTGAGGAGTTGCTTGAGGTCATCACCTGGGCCCAAC
genomic: GAGGAAGGCTGAAATGGCCCGGTTTGCTGATGCGTTCATTGCACTGCCTGgtatgataat ... tgcgcgacagGCGGCTACGGGACTCTTGAGGAGTTGCTTGAGGTCATCACCTGGGCCCAAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTCACTGGTGAGCCTGTTGGTGAAGTTAGAGCGGTCTCTGGCATGCACGAGAGGAAGGCTGAAATGGCCCGGTTTGCTGATGCGTTCATTGCACTGCCTGgtatgataatttagttgctactacgacgtcgtttgcagtgaattttttttgatgctgcatcctaaggatgcaaaatttgacactcttaatttgcgcgacag
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