1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GCTGGATGTAGGAGCTGGGAGAGACATGCATCACCAAAAGTGCCCGAGAAGCAAGCTTTATTCACAGCTGATCATGTACCTTGGACCAgtacgtgccttcagcatccttttccttctctgaagatctccgaatctgaaaccttttgcagttgcctgacaaatctgaatatattgtttctgtttcag
species | Oryza sativa |
transcript | LOC_Os01g38980.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: GAGAAGCAAGCTTCATTCACAGCTGATCATGTACCTTGGACCA AACGAGAGGGAAGCTTTTGAAGTTGTTGTGGAGGGTGGGAAGCTGATGTACEST: gi|8956924|gb|BE230727.1|BE230727
genomic: GAGAAGCAAGCTTTATTCACAGCTGATCATGTACCTTGGACCAgtacgtgcct ... tctgtttcagAACGAGAGGGAAGCTTTTGAAGTTGTTGTGGAGGGTGGGAAGCTGATGTAC
EST: AGTGCCCGAGAAGCAAGCTTTATTCACAGCTGATCATGTACCTTGGACCA AACGAGAGGGAAGCTTTTGAAGTTGTTGTGGAGGGTGGGAAGCTGATGTACEST: gi|29671489|gb|CB667764.1|CB667764
genomic: AGTGCCCGAGAAGCAAGCTTTATTCACAGCTGATCATGTACCTTGGACCAgtacgtgcct ... tctgtttcagAACGAGAGGGAAGCTTTTGAAGTTGTTGTGGAGGGTGGGAAGCTGATGTAC
EST: GAGAAGCAAGCTTTATTCACAGCTGATCATGTACCTTGGACCA AACGAGAGGGAAGCTTTTGAAGTTGTTGTGGAGGGTGGGAAGCTGATGTAC
genomic: GAGAAGCAAGCTTTATTCACAGCTGATCATGTACCTTGGACCAgtacgtgcct ... tctgtttcagAACGAGAGGGAAGCTTTTGAAGTTGTTGTGGAGGGTGGGAAGCTGATGTAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCTGGATGTAGGAGCTGGGAGAGACATGCATCACCAAAAGTGCCCGAGAAGCAAGCTTTATTCACAGCTGATCATGTACCTTGGACCAgtacgtgccttcagcatccttttccttctctgaagatctccgaatctgaaaccttttgcagttgcctgacaaatctgaatatattgtttctgtttcag
- - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT