1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GTGAAAGAGAGAAGGTCCTGAGCCATTTTAGATCTGGGCGATCTCCTATTTTGGTTGCAACAGATGTTGCTGCACGAGGCTTAGACATCAAAGATATCAGgtactccatccgttcttttctggatgtttttgttctcaaatagatgtcctttttagcctttataggcagtgtttcctaacttaccccctagtagaagcgc...
species | Oryza sativa |
transcript | LOC_Os01g36860.2 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TTGGTTGCAACAGATGTTGCTGCACGAGGCTTAGACATCAAAGATATCAG GGTTGTGATCAATTATGATTTCCCCACTGGCATTGAAGATTATGTTCACCGEST: gi|29627752|gb|CB632763.1|CB632763
genomic: TTGGTTGCAACAGATGTTGCTGCACGAGGCTTAGACATCAAAGATATCAGgtactccatc ... attggcacagGGTTGTGATCAATTATGATTTCCCCACTGGCATTGAAGATTATGTTCACCG
EST: TTGGTTGCAACAGATGTTGCTGCACGAGGCTTAGACATCAAAGATATCAG GGTTGTGATCAATTATGATTTCCCCACTGGCATTGAAGATTATGTTCACCGEST: gi|29646239|gb|CB651246.1|CB651246
genomic: TTGGTTGCAACAGATGTTGCTGCACGAGGCTTAGACATCAAAGATATCAGgtactccatc ... attggcacagGGTTGTGATCAATTATGATTTCCCCACTGGCATTGAAGATTATGTTCACCG
EST: TTGGTTGCAACAGATGTTGCTGCACGAGGCTTAGACATCAAAGATATCAG GGTTGTGATCAATTATGATTTCCCCACTGGCATTGAAGATTATGTTCACCG
genomic: TTGGTTGCAACAGATGTTGCTGCACGAGGCTTAGACATCAAAGATATCAGgtactccatc ... attggcacagGGTTGTGATCAATTATGATTTCCCCACTGGCATTGAAGATTATGTTCACCG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGAAAGAGAGAAGGTCCTGAGCCATTTTAGATCTGGGCGATCTCCTATTTTGGTTGCAACAGATGTTGCTGCACGAGGCTTAGACATCAAAGATATCAGgtactccatccgttcttttctggatgtttttgttctcaaatagatgtcctttttagcctttataggcagtgtttcctaacttaccccctagtagaagcgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cccccta