1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
GGATTTGAAATAGTTACGGTGAACCCAGCAATGGTCATTGGTCCCCTGCTGCAGCCTTCACTGAATACTAGTGCTGAAGCAATTCTGAAGCTAATCAATGgtatggggtcaacaccttaactaacacatttccttgaattgagctacagcgtacgtgccttcatctacagtagatttttcttgtgatgcctacaacaatt...
species | Oryza sativa |
transcript | LOC_Os01g34480.2 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: GCAGCCTTCACTGAATACTAGTGCTGAAGCAATTCTGAAGCTAATCAATG GATCATCCTCGACATATCCTAATTTCAGCTTTGGCTGGATAAACGTTAAGGEST: gi|29616459|gb|CB621471.1|CB621471
genomic: GCAGCCTTCACTGAATACTAGTGCTGAAGCAATTCTGAAGCTAATCAATGgtatggggtc ... gtccatgcagGATCATCCTCGACATATCCTAATTTCAGCTTTGGCTGGATAAACGTTAAGG
EST: GCAGCCTTCACTGAATACTAGTGCTGAAGCAATTCTGAAGCTAATCAATG GATCATCCTCGACATATCCTAATTTCAGCTTTGGCTGGATAAACGTTAAGGEST: gi|117221000|gb|CT845506.1|CT845506
genomic: GCAGCCTTCACTGAATACTAGTGCTGAAGCAATTCTGAAGCTAATCAATGgtatggggtc ... gtccatgcagGATCATCCTCGACATATCCTAATTTCAGCTTTGGCTGGATAAACGTTAAGG
EST: GCAGCCTTCACTGAATACTAGTGCTGAAGCAATTCTGAAGCTAATCA-TG GATCATCCTCGACATATEST: gi|2312785|gb|C28940.1|C28940
genomic: GCAGCCTTCACTGAATACTAGTGCTGAAGCAATTCTGAAGCTAATCAATGgtatggggtc ... gtccatgcagGATCATCCTCGACATAT
EST: GCAGCCTTCACTGAATACTAGTGCTGAAGCAATTCTGAAGCTAATCAATG GATCATCCTCGACATATCCTAATTTCAGCTTTGGGCTGGGATAAACGGTAA
genomic: GCAGCCTTCACTGAATACTAGTGCTGAAGCAATTCTGAAGCTAATCAATGgtatggggtc ... gtccatgcagGATCATCCTCGACATATCCTAATTTCAGCTTTGG-CTGG-ATAAACGTTAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGATTTGAAATAGTTACGGTGAACCCAGCAATGGTCATTGGTCCCCTGCTGCAGCCTTCACTGAATACTAGTGCTGAAGCAATTCTGAAGCTAATCAATGgtatggggtcaacaccttaactaacacatttccttgaattgagctacagcgtacgtgccttcatctacagtagatttttcttgtgatgcctacaacaatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC