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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGATTTGAAATAGTTACGGTGAACCCAGCAATGGTCATTGGTCCCCTGCTGCAGCCTTCACTGAATACTAGTGCTGAAGCAATTCTGAAGCTAATCAATGgtatggggtcaacaccttaactaacacatttccttgaattgagctacagcgtacgtgccttcatctacagtagatttttcttgtgatgcctacaacaatt...

Basic information

species Oryza sativa
transcript LOC_Os01g34480.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g34480.2 (Oryza sativa), 5'ss of exon 4
lower sequence: GRMZM2G179981_T01 (Zea mays), 5'ss of exon 4
GGATTTGAAATAGTTACGGTGAACCCAGCAATGGTCATTGGTCCCCTGCTGCAGCCTTCACTGAATACTAGTGCTGAAGCAATTCTGAAGCTAATCAATGgtatggggtcaacaccttaactaacacatttccttgaattgagctacagcgtacgtgccttcatctacagtagatttttcttgtgatgcctacaacaatt
||| ||||||| |||||  | |||||||| ||||| ||||||||||||||||||||| |||| ||||| |||||||||||||| |||||| ||||||||||||||   |  |   |   | ||||   |   || |  |     || ||     |     |||||      | ||  ||   |                 
GGACTTGAAATCGTTACTATAAACCCAGCGATGGTTATTGGTCCCCTGCTGCAGCCTACACTAAATACCAGTGCTGAAGCAATCCTGAAGTTAATCAATGgtatgatatatatgtcc-gattaacttttaagctggcctgtttgtagagtagttgaaatctcatcgttttcatatcattgcag-----------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|568053|gb|D38888.1|D38888
EST:     GCAGCCTTCACTGAATACTAGTGCTGAAGCAATTCTGAAGCTAATCAATG                         GATCATCCTCGACATATCCTAATTTCAGCTTTGGCTGGATAAACGTTAAGG
genomic: GCAGCCTTCACTGAATACTAGTGCTGAAGCAATTCTGAAGCTAATCAATGgtatggggtc ... gtccatgcagGATCATCCTCGACATATCCTAATTTCAGCTTTGGCTGGATAAACGTTAAGG
EST: gi|86431768|gb|CI085379.1|CI085379
EST:     TGAAGCTAATCAATG                         GATCATCCTCGACATATCCTAATTTCAGCTTNGGCTGGATAAACGTTAAGG
genomic: TGAAGCTAATCAATGgtatggggtc ... gtccatgcagGATCATCCTCGACATATCCTAATTTCAGCTTTGGCTGGATAAACGTTAAGG
EST: gi|44671842|gb|CR285276.1|CR285276
EST:     GCAGCCTCCACTGAATACTAGTGCTGAAGCAATTCTGAAGCTAATCAATG                         GATCATCCTCGACATATCCTAATTTCAGCTTTGGCTGGATAAACGTTAAGG
genomic: GCAGCCTTCACTGAATACTAGTGCTGAAGCAATTCTGAAGCTAATCAATGgtatggggtc ... gtccatgcagGATCATCCTCGACATATCCTAATTTCAGCTTTGGCTGGATAAACGTTAAGG
EST: gi|29616459|gb|CB621471.1|CB621471
EST:     GCAGCCTTCACTGAATACTAGTGCTGAAGCAATTCTGAAGCTAATCAATG                         GATCATCCTCGACATATCCTAATTTCAGCTTTGGCTGGATAAACGTTAAGG
genomic: GCAGCCTTCACTGAATACTAGTGCTGAAGCAATTCTGAAGCTAATCAATGgtatggggtc ... gtccatgcagGATCATCCTCGACATATCCTAATTTCAGCTTTGGCTGGATAAACGTTAAGG
EST: gi|86537762|gb|CI177968.1|CI177968
EST:     GCAATTCTGAAGCTAATCAATG                         GATCATCCTCGACATATCCTAATTTCAGCTTTGGCTGGATAAACGTTAAGG
genomic: GCAATTCTGAAGCTAATCAATGgtatggggtc ... gtccatgcagGATCATCCTCGACATATCCTAATTTCAGCTTTGGCTGGATAAACGTTAAGG
EST: gi|4715566|gb|AU056682.1|AU056682
EST:     GAAGCAATTCTAAAGCTAATCAATG                         GATCATCCTCGACATANCCTAATTTCAGCTTTGGCTGGATAAACGTTAAGG
genomic: GAAGCAATTCTGAAGCTAATCAATGgtatggggtc ... gtccatgcagGATCATCCTCGACATATCCTAATTTCAGCTTTGGCTGGATAAACGTTAAGG
EST: gi|86604170|gb|CI114944.1|CI114944
EST:     GAAGCTAATCAATG                         GATCATCCTCGACATATCCTAATTTCAGCTTTGGCTGGATAAACGTTAAGG
genomic: GAAGCTAATCAATGgtatggggtc ... gtccatgcagGATCATCCTCGACATATCCTAATTTCAGCTTTGGCTGGATAAACGTTAAGG
EST: gi|87009973|gb|CI277474.1|CI277474
EST:     GCAGCCTTCACTGAATACTAGTGCTGAAGCAATTCTGAAGCTAATCAATG                         GATCATCCTCGACATATCCTAATTTCAGCTTTGGCTGGATAAACGTTAAGG
genomic: GCAGCCTTCACTGAATACTAGTGCTGAAGCAATTCTGAAGCTAATCAATGgtatggggtc ... gtccatgcagGATCATCCTCGACATATCCTAATTTCAGCTTTGGCTGGATAAACGTTAAGG
EST: gi|89192986|gb|CI050284.1|CI050284
EST:     CAGCCTTCACTGAATACTAGTGCTGAAGCAATTCTGAAGCTAATCAATG                         GATCATCCTCGACATATCCTAATTTCAGCTTTGGCTGGATAAACGTTAAGG
genomic: CAGCCTTCACTGAATACTAGTGCTGAAGCAATTCTGAAGCTAATCAATGgtatggggtc ... gtccatgcagGATCATCCTCGACATATCCTAATTTCAGCTTTGGCTGGATAAACGTTAAGG
EST: gi|89176203|gb|CI043224.1|CI043224
EST:     GCAGCCTTCACTGAATACTAGTGCTGAAGCAATTCTGAAGCTAATCAATG                         GATCATCCTCGACATATCCTAATTTCAGCTTTGGCTGGATAAACGTTAAGG
genomic: GCAGCCTTCACTGAATACTAGTGCTGAAGCAATTCTGAAGCTAATCAATGgtatggggtc ... gtccatgcagGATCATCCTCGACATATCCTAATTTCAGCTTTGGCTGGATAAACGTTAAGG
EST: gi|86593765|gb|CI266445.1|CI266445
EST:     GCAGCCTTCACTGAATACTAGTGCTGAAGCAATTCTGAAGCTAATCAATG                         GATCATCCTCGACATATCCTAATTTCAGCTTTGGCTGGATAAACGTTAAGG
genomic: GCAGCCTTCACTGAATACTAGTGCTGAAGCAATTCTGAAGCTAATCAATGgtatggggtc ... gtccatgcagGATCATCCTCGACATATCCTAATTTCAGCTTTGGCTGGATAAACGTTAAGG
EST: gi|86853770|gb|CI250021.1|CI250021
EST:     GCAGCCTTCACTGAATACTAGTGCTGAAGCAATTCTGAAGCTAATCAATG                         GATCATCCTCGACATATCCTAATTTCAGCTTTGGCTGGATAAACGTTAAGG
genomic: GCAGCCTTCACTGAATACTAGTGCTGAAGCAATTCTGAAGCTAATCAATGgtatggggtc ... gtccatgcagGATCATCCTCGACATATCCTAATTTCAGCTTTGGCTGGATAAACGTTAAGG
EST: gi|86259620|gb|CI065493.1|CI065493
EST:     GAAGCTAATCAATG                         GATCATCCTCGACATATCCTAATTTCAGCTTTGGCTGGATAAACGTTAAGG
genomic: GAAGCTAATCAATGgtatggggtc ... gtccatgcagGATCATCCTCGACATATCCTAATTTCAGCTTTGGCTGGATAAACGTTAAGG
EST: gi|88907332|gb|CI090126.1|CI090126
EST:     CTGAAGCTAATCAATG                         GATCATCCTCGACATATCCTAATTTCAGCTTTGGCTGGATAAACGTTAAGG
genomic: CTGAAGCTAATCAATGgtatggggtc ... gtccatgcagGATCATCCTCGACATATCCTAATTTCAGCTTTGGCTGGATAAACGTTAAGG
EST: gi|33808886|gb|CF330328.1|CF330328
EST:     GCAGCCTTCACTGAATACTAGTGCTGAAGCAATTCTGAAGTTAATCAATG                         GATCATCCTCGACATATCCTAATTTCAGCTTTGGCTGGATAAACGTTAAGG
genomic: GCAGCCTTCACTGAATACTAGTGCTGAAGCAATTCTGAAGCTAATCAATGgtatggggtc ... gtccatgcagGATCATCCTCGACATATCCTAATTTCAGCTTTGGCTGGATAAACGTTAAGG
EST: gi|88828470|gb|CI073340.1|CI073340
EST:     GCAGCCTTCACTGAATACTAGTGCTGAAGCAATTCTGAAGCTAATCAATG                         GATCATCCTCGACATATCCTAATTTCAGCTTTGGCTGGATAAACGTTAAGG
genomic: GCAGCCTTCACTGAATACTAGTGCTGAAGCAATTCTGAAGCTAATCAATGgtatggggtc ... gtccatgcagGATCATCCTCGACATATCCTAATTTCAGCTTTGGCTGGATAAACGTTAAGG
EST: gi|33658080|gb|CF280694.1|CF280694
EST:     GCAGCCTTCACTGAATACTAGTGCTGAAGCAATTCTGAAGCTAATCAATG                         GATCATCCTCGACATATCCTAATTTCAGCTTTGGCTGGATAAACGTTAAGG
genomic: GCAGCCTTCACTGAATACTAGTGCTGAAGCAATTCTGAAGCTAATCAATGgtatggggtc ... gtccatgcagGATCATCCTCGACATATCCTAATTTCAGCTTTGGCTGGATAAACGTTAAGG
EST: gi|86595224|gb|CI262462.1|CI262462
EST:     GCAGCCTTCACTGAATACTAGTGCTGAAGCAATTCTGAAGCTAATCAATG                         GATCATCCTCGACATATCCTAATTTCAGCTTTGGCTGGATAAACGTTAAGG
genomic: GCAGCCTTCACTGAATACTAGTGCTGAAGCAATTCTGAAGCTAATCAATGgtatggggtc ... gtccatgcagGATCATCCTCGACATATCCTAATTTCAGCTTTGGCTGGATAAACGTTAAGG
EST: gi|86541265|gb|CI181471.1|CI181471
EST:     GCAGCCTTTACTGAATACTAGTGCTGAAGCAATTCTGAAGCTAATCGATG                         GATCATCCTCGACATATCCTAATTTCAGCTTTGGCTGGATAAACGTTAAGG
genomic: GCAGCCTTCACTGAATACTAGTGCTGAAGCAATTCTGAAGCTAATCAATGgtatggggtc ... gtccatgcagGATCATCCTCGACATATCCTAATTTCAGCTTTGGCTGGATAAACGTTAAGG
EST: gi|88247035|gb|CI246884.1|CI246884
EST:     TCACTGAATACTAGTGCTGAAGCAATTCTGAAGCTAATCAATG                         GATCATCCTCGACATATCCTAATTTCAGCTTTGGCTGGATAAACGTTAAGG
genomic: TCACTGAATACTAGTGCTGAAGCAATTCTGAAGCTAATCAATGgtatggggtc ... gtccatgcagGATCATCCTCGACATATCCTAATTTCAGCTTTGGCTGGATAAACGTTAAGG
EST: gi|87031437|gb|CI261811.1|CI261811
EST:     GCAGCCTTCACTGAATACTAGTGCTGAAGCAATTCTGAAGCTAATCAATG                         GATCATCCTCGACATATCCTAATTTCAGCTTTGGCTGGATAAACGTTAAGG
genomic: GCAGCCTTCACTGAATACTAGTGCTGAAGCAATTCTGAAGCTAATCAATGgtatggggtc ... gtccatgcagGATCATCCTCGACATATCCTAATTTCAGCTTTGGCTGGATAAACGTTAAGG
EST: gi|218497240|gb|FG957726.1|FG957726
EST:     GCAGCCTTCACTGAATACTAGTGCTGAAGCAATTCTGAAGCTAATCAATG                         GATCATCCTCGACATATCCTAATTTCAGCTTTGGCTGGATAAACGTTAAGG
genomic: GCAGCCTTCACTGAATACTAGTGCTGAAGCAATTCTGAAGCTAATCAATGgtatggggtc ... gtccatgcagGATCATCCTCGACATATCCTAATTTCAGCTTTGGCTGGATAAACGTTAAGG
EST: gi|89188281|gb|CI115530.1|CI115530
EST:     GCAGCCTTCACTGAATACTAGTGCTGAAGCGATTCTGAAGCTAATCAATG                         GATCATCCTCGACATATCCTAATTTCAGCTTTGGCTGGATAAACGTTAAGG
genomic: GCAGCCTTCACTGAATACTAGTGCTGAAGCAATTCTGAAGCTAATCAATGgtatggggtc ... gtccatgcagGATCATCCTCGACATATCCTAATTTCAGCTTTGGCTGGATAAACGTTAAGG
EST: gi|86855526|gb|CI267055.1|CI267055
EST:     GCAGCCTTCACTGAATACTAGTGCTGAAGCAATTCTGAAGCTAATCAATG                         GATCATCCTCGACATATCCTAATTTCAGCTTTGGCTGGATAAACGTTAAGG
genomic: GCAGCCTTCACTGAATACTAGTGCTGAAGCAATTCTGAAGCTAATCAATGgtatggggtc ... gtccatgcagGATCATCCTCGACATATCCTAATTTCAGCTTTGGCTGGATAAACGTTAAGG
EST: gi|117221000|gb|CT845506.1|CT845506
EST:     GCAGCCTTCACTGAATACTAGTGCTGAAGCAATTCTGAAGCTAATCA-TG                         GATCATCCTCGACATAT
genomic: GCAGCCTTCACTGAATACTAGTGCTGAAGCAATTCTGAAGCTAATCAATGgtatggggtc ... gtccatgcagGATCATCCTCGACATAT
EST: gi|88828612|gb|CI073482.1|CI073482
EST:     ACTAGTGCTGAAGCAATTCTGAAGCTAATCAATG                         GATCATCCTCGACATATCCTAATTTCAGCTTTGGCTGGATAAACGTTAAGG
genomic: ACTAGTGCTGAAGCAATTCTGAAGCTAATCAATGgtatggggtc ... gtccatgcagGATCATCCTCGACATATCCTAATTTCAGCTTTGGCTGGATAAACGTTAAGG
EST: gi|88222853|gb|CI220704.1|CI220704
EST:     AGCTAATCAATG                         GATCATCCTCGACATATCCTAATTTCAGCTTTGGCTGGATAAACGTTAAGG
genomic: AGCTAATCAATGgtatggggtc ... gtccatgcagGATCATCCTCGACATATCCTAATTTCAGCTTTGGCTGGATAAACGTTAAGG
EST: gi|89179866|gb|CI044145.1|CI044145
EST:     GCAGCCTTCACTGAATACTAGTGCTGAAGCAATTCTGAAGCTAATCAATG                         GATCATCCTCGACATATCCTAATTTCAGCTTTGGCTGGATAAACGTTAAGG
genomic: GCAGCCTTCACTGAATACTAGTGCTGAAGCAATTCTGAAGCTAATCAATGgtatggggtc ... gtccatgcagGATCATCCTCGACATATCCTAATTTCAGCTTTGGCTGGATAAACGTTAAGG
EST: gi|88840356|gb|CI079810.1|CI079810
EST:     AAGCTAATCAATG                         GATCATCCTCGACATATCCTAATTTCAGCTTTGGCTGGATAAACGTTAAGG
genomic: AAGCTAATCAATGgtatggggtc ... gtccatgcagGATCATCCTCGACATATCCTAATTTCAGCTTTGGCTGGATAAACGTTAAGG
EST: gi|89181441|gb|CI112947.1|CI112947
EST:     GCTAATCAATG                         GATCATCCTCGACATATCCTAATTTCAGCTTTGGCTGGATAAACATTAAGG
genomic: GCTAATCAATGgtatggggtc ... gtccatgcagGATCATCCTCGACATATCCTAATTTCAGCTTTGGCTGGATAAACGTTAAGG
EST: gi|88243689|gb|CI242811.1|CI242811
EST:     GCTAATCAATG                         GATCATCCTCGACATATCCTAATTTCAGCTTTGGCTGGATAAACGTTAAGG
genomic: GCTAATCAATGgtatggggtc ... gtccatgcagGATCATCCTCGACATATCCTAATTTCAGCTTTGGCTGGATAAACGTTAAGG
EST: gi|88218768|gb|CI218617.1|CI218617
EST:     GCAGCCTTCACTGAATACTAGTGCTGAAGCAATTCTGAAGCTAATCAATG                         GATCATCCTCGACATATCCTAATTTCAGCTTTGGCTGGATAAACGTTAAGG
genomic: GCAGCCTTCACTGAATACTAGTGCTGAAGCAATTCTGAAGCTAATCAATGgtatggggtc ... gtccatgcagGATCATCCTCGACATATCCTAATTTCAGCTTTGGCTGGATAAACGTTAAGG
EST: gi|86424481|gb|CI063242.1|CI063242
EST:     GCAGCCTTCACTGAATACTAGTGCTGAAGCAATTCTGAAGCTAATCAATG                         GATCATCCTCGACATATCCTAATTTCAGCTTTGGCTGGATAAACGTTAAGG
genomic: GCAGCCTTCACTGAATACTAGTGCTGAAGCAATTCTGAAGCTAATCAATGgtatggggtc ... gtccatgcagGATCATCCTCGACATATCCTAATTTCAGCTTTGGCTGGATAAACGTTAAGG
EST: gi|89174836|gb|CI111034.1|CI111034
EST:     AGCTAATCAATG                         GATCATCCTCGACATATCCTAATTTCAGCTTTGGCTGGATAAACGTTAAGG
genomic: AGCTAATCAATGgtatggggtc ... gtccatgcagGATCATCCTCGACATATCCTAATTTCAGCTTTGGCTGGATAAACGTTAAGG
EST: gi|86510036|gb|CI152669.1|CI152669
EST:     GCAGCCTTCACTGAATACTAGTGCTGAAGCAATTCTGAAGCTAATCAATG                         GATCATCCTCGACATATCCTAATTTCAGCTTTGGCTGGATAAACGTTAAGG
genomic: GCAGCCTTCACTGAATACTAGTGCTGAAGCAATTCTGAAGCTAATCAATGgtatggggtc ... gtccatgcagGATCATCCTCGACATATCCTAATTTCAGCTTTGGCTGGATAAACGTTAAGG
EST: gi|86536058|gb|CI176264.1|CI176264
EST:     GCTAATCAATG                         GATCATCCTCGACATATCCTAATTTCAGCTTTGGCTGGATAAACGTTAAGG
genomic: GCTAATCAATGgtatggggtc ... gtccatgcagGATCATCCTCGACATATCCTAATTTCAGCTTTGGCTGGATAAACGTTAAGG
EST: gi|87024806|gb|CI261315.1|CI261315
EST:     GCAGCCTTCACTGAATACTAGTGCTGAAGCAATTCTGAAGCTAATCAATG                         GATCATCCTCGACATATCCTAATTTCAGCTTTGGCTGGATAAACGTTAAGG
genomic: GCAGCCTTCACTGAATACTAGTGCTGAAGCAATTCTGAAGCTAATCAATGgtatggggtc ... gtccatgcagGATCATCCTCGACATATCCTAATTTCAGCTTTGGCTGGATAAACGTTAAGG
EST: gi|88246948|gb|CI246797.1|CI246797
EST:     CTGAATACTAGTGCTGAAGCAATTCTGAAGCTAATCAATG                         GATCATCCTCGACATATCCTAATTTCAGCTTTGGCTGGATAAACGTTAAGG
genomic: CTGAATACTAGTGCTGAAGCAATTCTGAAGCTAATCAATGgtatggggtc ... gtccatgcagGATCATCCTCGACATATCCTAATTTCAGCTTTGGCTGGATAAACGTTAAGG
EST: gi|87020737|gb|CI267458.1|CI267458
EST:     GCAGCCTTCACTGAATACTAGTGCTGAAGCAATTCTGAAGCTAATCAATG                         GATCATCCTCGACATATCCTAATTTCAGCTTTGGCTGGATAAACGTTAAGG
genomic: GCAGCCTTCACTGAATACTAGTGCTGAAGCAATTCTGAAGCTAATCAATGgtatggggtc ... gtccatgcagGATCATCCTCGACATATCCTAATTTCAGCTTTGGCTGGATAAACGTTAAGG
EST: gi|87019002|gb|CI256887.1|CI256887
EST:     GCAGCCTTCACTGAATACTAGTGCTGAAGCAATTCTGAAGCTAATCAATG                         GATCATCCTCGACATATCCTAATTTCAGCTTTGGCTGGATAAACGTTAAGG
genomic: GCAGCCTTCACTGAATACTAGTGCTGAAGCAATTCTGAAGCTAATCAATGgtatggggtc ... gtccatgcagGATCATCCTCGACATATCCTAATTTCAGCTTTGGCTGGATAAACGTTAAGG
EST: gi|88833896|gb|CI077377.1|CI077377
EST:     TTCTGAAGCTAATCAATG                         GATCATCCTCGACATATCCTAATTTCAGCTTTGGCTGGATAAACGTTAAGG
genomic: TTCTGAAGCTAATCAATGgtatggggtc ... gtccatgcagGATCATCCTCGACATATCCTAATTTCAGCTTTGGCTGGATAAACGTTAAGG
EST: gi|86427914|gb|CI073011.1|CI073011
EST:     GAAGCAATTCTGAAGCTAATCAATG                         GATCATCCTCGACATATCCTAATTTCAGCTTTGGCTGGATAAACGTTAAGG
genomic: GAAGCAATTCTGAAGCTAATCAATGgtatggggtc ... gtccatgcagGATCATCCTCGACATATCCTAATTTCAGCTTTGGCTGGATAAACGTTAAGG
EST: gi|11564616|gb|AU165252.1|AU165252
EST:     AAGCCTTCACTTGAATACTAGTGNTGAAGCAATTCTGAAGCTAATCAATG                         GATCATCCTCGGACATATCCTAATTTCAGCTTTGGCTGGATAAACGTTAAG
genomic: -AGCCTTCAC-TGAATACTAGTGCTGAAGCAATTCTGAAGCTAATCAATGgtatggggtc ... gtccatgcagGATCATCCTC-GACATATCCTAATTTCAGCTTTGGCTGGATAAACGTTAAG
EST: gi|87029301|gb|CI250234.1|CI250234
EST:     GCTAATCAATG                         GATCATCCTCGACATATCCTAATTTCAGCTTTGGCTGGATAAACGTTAAGG
genomic: GCTAATCAATGgtatggggtc ... gtccatgcagGATCATCCTCGACATATCCTAATTTCAGCTTTGGCTGGATAAACGTTAAGG
EST: gi|88248464|gb|CI248313.1|CI248313
EST:     GCAGCCTTCACTGAATACTAGTGCTGAAGCAATTCTGAAGCTAATCAATG                         GATCATCCTCGACATATCCTAATTTCAGCTTTGGCTGGATAAACGTTAAGG
genomic: GCAGCCTTCACTGAATACTAGTGCTGAAGCAATTCTGAAGCTAATCAATGgtatggggtc ... gtccatgcagGATCATCCTCGACATATCCTAATTTCAGCTTTGGCTGGATAAACGTTAAGG
EST: gi|86593746|gb|CI266426.1|CI266426
EST:     GCAGCCTTCACTGAATACTAGTGCTGAAGCTATTCTGAAGCTAATCAATG                         GATCATCCTCGACATATCCTAATTTCAGCTTTGGCTGGATAAACGTTAAGG
genomic: GCAGCCTTCACTGAATACTAGTGCTGAAGCAATTCTGAAGCTAATCAATGgtatggggtc ... gtccatgcagGATCATCCTCGACATATCCTAATTTCAGCTTTGGCTGGATAAACGTTAAGG
EST: gi|88908183|gb|CI090778.1|CI090778
EST:     TGAAGCAATTCTGAAGCTAATCAATG                         GATCATCCTCGACATATCCTAATTTCAGCTTTGGCTGGATAAACGTGAAGG
genomic: TGAAGCAATTCTGAAGCTAATCAATGgtatggggtc ... gtccatgcagGATCATCCTCGACATATCCTAATTTCAGCTTTGGCTGGATAAACGTTAAGG
EST: gi|88958573|gb|CI096089.1|CI096089
EST:     GCAGCCTTCACTGAATACTAGTGCTGAAGCAATTCTGAAGCTAATCAATG                         GATCATCCTCGACATATCCTAATTTCAGCTTTGGCTGGATAAACGTTAAGG
genomic: GCAGCCTTCACTGAATACTAGTGCTGAAGCAATTCTGAAGCTAATCAATGgtatggggtc ... gtccatgcagGATCATCCTCGACATATCCTAATTTCAGCTTTGGCTGGATAAACGTTAAGG
EST: gi|2312785|gb|C28940.1|C28940
EST:     GCAGCCTTCACTGAATACTAGTGCTGAAGCAATTCTGAAGCTAATCAATG                         GATCATCCTCGACATATCCTAATTTCAGCTTTGGGCTGGGATAAACGGTAA
genomic: GCAGCCTTCACTGAATACTAGTGCTGAAGCAATTCTGAAGCTAATCAATGgtatggggtc ... gtccatgcagGATCATCCTCGACATATCCTAATTTCAGCTTTGG-CTGG-ATAAACGTTAA
EST: gi|86412780|gb|CI067185.1|CI067185
EST:     GCAGCCTTCACTGAATACTAGTGCTGAAGCAATTCTGAAGCTAATCAATG                         GATCATCCTCGACATATCCTAATTTCAGCTTTGGCTGGATAAACGTTAAGG
genomic: GCAGCCTTCACTGAATACTAGTGCTGAAGCAATTCTGAAGCTAATCAATGgtatggggtc ... gtccatgcagGATCATCCTCGACATATCCTAATTTCAGCTTTGGCTGGATAAACGTTAAGG
EST: gi|89173370|gb|CI041263.1|CI041263
EST:     GCAGCCTTCACTGAATACTAGTGCTGAAGCAATTCTGAAGCTAATCAATG                         GATCATCCTCGACATATCCTAATTTCAGCTTTGGCTGGATAAACGTTAAGG
genomic: GCAGCCTTCACTGAATACTAGTGCTGAAGCAATTCTGAAGCTAATCAATGgtatggggtc ... gtccatgcagGATCATCCTCGACATATCCTAATTTCAGCTTTGGCTGGATAAACGTTAAGG
EST: gi|5002866|gb|AU067975.1|AU067975
EST:     CAGCCTTCACTGAATNCTAGTGCTGAAGCAATTCTGAAGCTAATCCAATG                         GATCATCCTCGACATATCCTAATTTCAGCTTTGGCTGGATAANCGTTAAG
genomic: CAGCCTTCACTGAATACTAGTGCTGAAGCAATTCTGAAGCTAAT-CAATGgtatggggtc ... gtccatgcagGATCATCCTCGACATATCCTAATTTCAGCTTTGGCTGGATAAACGTTAAG
EST: gi|86545360|gb|CI185566.1|CI185566
EST:     AGCTAATCAATG                         GATCATCCTCGACATATCCTAATTTCAGCTTTGGCTGGATAAACGTTAAGG
genomic: AGCTAATCAATGgtatggggtc ... gtccatgcagGATCATCCTCGACATATCCTAATTTCAGCTTTGGCTGGATAAACGTTAAGG
EST: gi|86428683|gb|CI075364.1|CI075364
EST:     TTCACTGAATACTAGTGCTGAAGCAATTCTGAAGCTAATCAATG                         GATCATCCTCGACATATCCTAATTTCAGCTTTGGCTGGATAAACGTTAAGG
genomic: TTCACTGAATACTAGTGCTGAAGCAATTCTGAAGCTAATCAATGgtatggggtc ... gtccatgcagGATCATCCTCGACATATCCTAATTTCAGCTTTGGCTGGATAAACGTTAAGG
EST: gi|86602007|gb|CI260477.1|CI260477
EST:     AATACTAGTGCTGAAGCAATTCTGAAGCTAATCAATG                         GATCATCCTCGACATATCCTAATTTCAGCTTTGGCTGGATAAACGTTAAGG
genomic: AATACTAGTGCTGAAGCAATTCTGAAGCTAATCAATGgtatggggtc ... gtccatgcagGATCATCCTCGACATATCCTAATTTCAGCTTTGGCTGGATAAACGTTAAGG
EST: gi|86594228|gb|CI251100.1|CI251100
EST:     ACTGAATACTAGTGCTGAAGCAATTCTGAAGCTAATCAATG                         GATCATCCTCGACATATCCTAATTTCAGCTTTGGCTGGATAAACGTTAAGG
genomic: ACTGAATACTAGTGCTGAAGCAATTCTGAAGCTAATCAATGgtatggggtc ... gtccatgcagGATCATCCTCGACATATCCTAATTTCAGCTTTGGCTGGATAAACGTTAAGG
EST: gi|86602088|gb|CI260558.1|CI260558
EST:     AGCCTTCACTGAATACTAGTGCTGAAGCAATTCTGAAGCTAATCAATG                         GATCATCCTCGACATATCCTAATTTCAGCTTTGGCTGGATAAACGTTAAGG
genomic: AGCCTTCACTGAATACTAGTGCTGAAGCAATTCTGAAGCTAATCAATGgtatggggtc ... gtccatgcagGATCATCCTCGACATATCCTAATTTCAGCTTTGGCTGGATAAACGTTAAGG
EST: gi|86593825|gb|CI266505.1|CI266505
EST:     GCAGCCTTCACTGAATACTAGTGCTGAAGCAATTCTGAAGCTAATCAATG                         GATCATCCTCGACATATCCTAATTTCAGCTTTGGCTGGATAAACGTTAAGG
genomic: GCAGCCTTCACTGAATACTAGTGCTGAAGCAATTCTGAAGCTAATCAATGgtatggggtc ... gtccatgcagGATCATCCTCGACATATCCTAATTTCAGCTTTGGCTGGATAAACGTTAAGG
EST: gi|88218615|gb|CI218464.1|CI218464
EST:     AAGCTAATCAATG                         GATCATCCTCGACATATCCTAATTTCAGCTTTGGCTGGATAAACGTTAAGG
genomic: AAGCTAATCAATGgtatggggtc ... gtccatgcagGATCATCCTCGACATATCCTAATTTCAGCTTTGGCTGGATAAACGTTAAGG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GGATTTGAAATAGTTACGGTGAACCCAGCAATGGTCATTGGTCCCCTGCTGCAGCCTTCACTGAATACTAGTGCTGAAGCAATTCTGAAGCTAATCAATGgtatggggtcaacaccttaactaacacatttccttgaattgagctacagcgtacgtgccttcatctacagtagatttttcttgtgatgcctacaacaatt

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGAAGC