1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
TCCACAACGCTGCTCTTAGTGCACAGCCAGCTTTGGTGCAGAATGAACGAAAACTGCTAGAGAAGATCAACATTCTATGTCTGATGGAGATAATCTTTACgtatgactttgctacttgcttttatatgacaagaacaaatgccctattccatcgttttctttcttctaaaccttgtgttctttttcatattgtag
species | Oryza sativa |
transcript | LOC_Os01g32800.2 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: AAACTGCTAGAGAAGATCAACATTCTATGTCTGATGGAGATAATCTTTAC CCGGCCATCAGAAGACAGAACTATCCCATTAAGTGTTATAGCTGAGCGCACEST: gi|33806787|gb|CF329275.1|CF329275
genomic: AAACTGCTAGAGAAGATCAACATTCTATGTCTGATGGAGATAATCTTTACgtatgacttt ... catattgtagCCGGCCATCAGAAGACAGAACTATCCCATTAAGTGTTATAGCTGAGCGCAC
EST: AAACTGCTAGAGAAGATCAACATTCTATGTCTGATGGAGATAATCTTTAC CCGGCCATCAGAAGACAGAACTATCCCATTAAGTGTTATAGCTGAGCGCACEST: gi|87026926|gb|CI259579.1|CI259579
genomic: AAACTGCTAGAGAAGATCAACATTCTATGTCTGATGGAGATAATCTTTACgtatgacttt ... catattgtagCCGGCCATCAGAAGACAGAACTATCCCATTAAGTGTTATAGCTGAGCGCAC
EST: AAACTGCTAGAGAAGATCAACATTCTATGTCTGATGGAGATAATCTTTAC CCGGCCATCAGAAGACAGAACTATCCCATTAAGTGTTATAGCTGAGCGCACEST: gi|86854504|gb|CI256626.1|CI256626
genomic: AAACTGCTAGAGAAGATCAACATTCTATGTCTGATGGAGATAATCTTTACgtatgacttt ... catattgtagCCGGCCATCAGAAGACAGAACTATCCCATTAAGTGTTATAGCTGAGCGCAC
EST: TGTCTGATGGAGATAATCTTTAC CCGGCCATCAGAAGACAGAACTATCCCATTAAGTGTTATAGCTGAGCGCACEST: gi|27578052|gb|CB000747.1|CB000747
genomic: TGTCTGATGGAGATAATCTTTACgtatgacttt ... catattgtagCCGGCCATCAGAAGACAGAACTATCCCATTAAGTGTTATAGCTGAGCGCAC
EST: AAACTGCTAGAGAAGATCAACATTCTATGTCTGATGGAGATAATCTTTAC CCGGCCATCAGAAGACAGAACTATCCCATTAAGTGTTATAGCTGAGCGCACEST: gi|3759667|gb|C96925.1|C96925
genomic: AAACTGCTAGAGAAGATCAACATTCTATGTCTGATGGAGATAATCTTTACgtatgacttt ... catattgtagCCGGCCATCAGAAGACAGAACTATCCCATTAAGTGTTATAGCTGAGCGCAC
EST: AACTGCTAGAGAAAGATCAACATTCTATGTCTGATGGAGATAATCTTTAC CCGGCCATCAGAAGACAGAACTATCCCATTAAGTGTTATAGCTGAGCGCACEST: gi|14981128|gb|BI305819.1|BI305819
genomic: AACTGCTAGAG-AAGATCAACATTCTATGTCTGATGGAGATAATCTTTACgtatgacttt ... catattgtagCCGGCCATCAGAAGACAGAACTATCCCATTAAGTGTTATAGCTGAGCGCAC
EST: AAACTGCTAGAGAAGATCAACATTCTATGTCTGATGGAGATAATCTTTAC CCGGCCATCAGAAGACAGAACTATCCCATTAAGTGTTATAGCTGAGCGCACEST: gi|163925513|gb|EG715382.1|EG715382
genomic: AAACTGCTAGAGAAGATCAACATTCTATGTCTGATGGAGATAATCTTTACgtatgacttt ... catattgtagCCGGCCATCAGAAGACAGAACTATCCCATTAAGTGTTATAGCTGAGCGCAC
EST: AAACTGCTAGAGAAGATCAACATTCTATGTCTGATGGAGATAATCTTTAC CCGGCCATCAGAAGACAGAACTATCCCATTAAGTGTTATAGCTGAGCGCACEST: gi|163927856|gb|EG714236.1|EG714236
genomic: AAACTGCTAGAGAAGATCAACATTCTATGTCTGATGGAGATAATCTTTACgtatgacttt ... catattgtagCCGGCCATCAGAAGACAGAACTATCCCATTAAGTGTTATAGCTGAGCGCAC
EST: AAACTGCTAGAGAAGATCAACATTCTATGTCTGATGGAGATAATCTTTAC CCGGCCATCAGAAGACAGAACTATCCCATTAAGTGTTATAGCTGAGCGCACEST: gi|29687233|gb|CB683508.1|CB683508
genomic: AAACTGCTAGAGAAGATCAACATTCTATGTCTGATGGAGATAATCTTTACgtatgacttt ... catattgtagCCGGCCATCAGAAGACAGAACTATCCCATTAAGTGTTATAGCTGAGCGCAC
EST: AAACTGCTAGAGAAGATCAACATTCTATGTCTGATGGAGATAATCTTTAC CCGGCCATCAGAAGACAGAACTATCCCATTAAGTGTTATAGCTGAGCGCAC
genomic: AAACTGCTAGAGAAGATCAACATTCTATGTCTGATGGAGATAATCTTTACgtatgacttt ... catattgtagCCGGCCATCAGAAGACAGAACTATCCCATTAAGTGTTATAGCTGAGCGCAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCCACAACGCTGCTCTTAGTGCACAGCCAGCTTTGGTGCAGAATGAACGAAAACTGCTAGAGAAGATCAACATTCTATGTCTGATGGAGATAATCTTTACgtatgactttgctacttgcttttatatgacaagaacaaatgccctattccatcgttttctttcttctaaaccttgtgttctttttcatattgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT