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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAATGCTGAGAAAAAGTGGACGATACATAAGGACATAACCTGCAAAAAGCTACGTTGGACAGTTTCAGATATTGCTCTTTCACCTGATCAACGATACCTAgtaagactcttatgcattgttctcattctttcttttcttttgtgtgctgtttactcattgacatctagtgaactcactcttttcaggataacatatatga...

Basic information

species Oryza sativa
transcript LOC_Os01g28680.13
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29688485|gb|CB684760.1|CB684760
EST:     TACGTTGGACAGTTTCAGATATTGCTCTTTCACCTGATCAACGATACCTA                         GCTTATTCCAGTCTGTCACCTATCGTTCATATGGTAGATATCCAGAATGGC
genomic: TACGTTGGACAGTTTCAGATATTGCTCTTTCACCTGATCAACGATACCTAgtaagactct ... ctttttgcagGCTTATTCCAGTCTGTCACCTATCGTTCATATGGTAGATATCCAGAATGGC
EST: gi|29666638|gb|CB662913.1|CB662913
EST:     TACGTTGGACAGTTTCAGATATTGCTCTTTCACCTGATCAACGATACCTA                         GCTTATTCCAGTCTGTCACCTATCGTTCATATG
genomic: TACGTTGGACAGTTTCAGATATTGCTCTTTCACCTGATCAACGATACCTAgtaagactct ... ctttttgcagGCTTATTCCAGTCTGTCACCTATCGTTCATATG
EST: gi|33795075|gb|CF323413.1|CF323413
EST:     TACGTTGGACAGTTTCAGATATTGCTCTTTCACCTGATCAACGATACCTA                         GCTTATTCCAGTCTGTCACCTATCGTTCATATGGTAGATATCCAGAATGGC
genomic: TACGTTGGACAGTTTCAGATATTGCTCTTTCACCTGATCAACGATACCTAgtaagactct ... ctttttgcagGCTTATTCCAGTCTGTCACCTATCGTTCATATGGTAGATATCCAGAATGGC
EST: gi|29664056|gb|CB660331.1|CB660331
EST:     ACGTTGGACAGTTTCAGATATTGCTCTTTTCAC-TGATCAACGATACCTA                         GCTTATTCCAGTCTGTCACCTATCGTTCATA
genomic: ACGTTGGACAGTTTCAGATATTGCTCTTT-CACCTGATCAACGATACCTAgtaagactct ... ctttttgcagGCTTATTCCAGTCTGTCACCTATCGTTCATA
EST: gi|33674946|gb|CF303185.1|CF303185
EST:     TACGTTGGACAGTTTCAGATATTGCTCTTTCACCTGATCAACGATACCTA                         GCTTATTCCAGTCTGTCACCTATCGTTCATATGGTAGATATCCAGAATGGC
genomic: TACGTTGGACAGTTTCAGATATTGCTCTTTCACCTGATCAACGATACCTAgtaagactct ... ctttttgcagGCTTATTCCAGTCTGTCACCTATCGTTCATATGGTAGATATCCAGAATGGC
EST: gi|29612829|gb|CB617842.1|CB617842
EST:     TACGTTGGACAGTTTCAGATATTGCTCTTTCACCTGATCAACGATACCTA                         GCTTATTCCAGTCTGTCACCTATCGTTCATATGGTAGATATCCAGAATGGC
genomic: TACGTTGGACAGTTTCAGATATTGCTCTTTCACCTGATCAACGATACCTAgtaagactct ... ctttttgcagGCTTATTCCAGTCTGTCACCTATCGTTCATATGGTAGATATCCAGAATGGC
EST: gi|33676175|gb|CF304414.1|CF304414
EST:     TACGTTGGACAGTTTCAGATATTGCTCTTTCACCTGATCAACGATACCTA                         GCTTATTCCAGTCTGTCACCTATCGTTCATATGGTAGATATCCAGAATGGC
genomic: TACGTTGGACAGTTTCAGATATTGCTCTTTCACCTGATCAACGATACCTAgtaagactct ... ctttttgcagGCTTATTCCAGTCTGTCACCTATCGTTCATATGGTAGATATCCAGAATGGC
EST: gi|33675917|gb|CF304156.1|CF304156
EST:     TACGTTGGACAGTTTCAGATATTGCTCTTTCACCTGATCAACGATACCTA                         GCTTATTCCAGTCTGTCACCTATCGTTCATATG
genomic: TACGTTGGACAGTTTCAGATATTGCTCTTTCACCTGATCAACGATACCTAgtaagactct ... ctttttgcagGCTTATTCCAGTCTGTCACCTATCGTTCATATG
EST: gi|33676806|gb|CF305045.1|CF305045
EST:     TACGTTGGACAGTTTCAGATATTGCTCTTTCACCTGATCAACGATACCTA                         GCTTATTCCAGTCTGTCACCTATCGTTCATATGGTAGATATCCAGAATGGC
genomic: TACGTTGGACAGTTTCAGATATTGCTCTTTCACCTGATCAACGATACCTAgtaagactct ... ctttttgcagGCTTATTCCAGTCTGTCACCTATCGTTCATATGGTAGATATCCAGAATGGC
EST: gi|33693127|gb|CF321366.1|CF321366
EST:     TACGTTGGACAGTTTCAGATATTGCTCTTTCACCTGATCAACGATACCTA                         GCTTATTCCAGTCTGTCACCTATCGTTCATATGGTAGATATCCAGAATGGC
genomic: TACGTTGGACAGTTTCAGATATTGCTCTTTCACCTGATCAACGATACCTAgtaagactct ... ctttttgcagGCTTATTCCAGTCTGTCACCTATCGTTCATATGGTAGATATCCAGAATGGC