1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GGTGATTGTTTATAACTATCCCAAAGAAATAAAGGCATTTTATATGAGACTCAATGATGATCAGAAGACTGTAGCTGCTATGGATGTTCTTGTGCCCAAGgtaaatataaatatttcagacttctagttagttccaatataggttaggtgtaagcatgtaaatgtgttgcatgaacataaattttgaggttaggtgtaat...
species | Oryza sativa |
transcript | LOC_Os01g27520.2 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TGGATGTTCTTGTGCCCAAG GTTGGTGAGTTGGTTGGTGGAAGCCAAAGGGAGGAACGTCTGGACCTTCTCEST: gi|88503370|gb|CI430876.1|CI430876
genomic: TGGATGTTCTTGTGCCCAAGgtaaatataa ... tcttccaaagGTTGGTGAGTTGGTTGGTGGAAGCCAAAGGGAGGAACGTCTGGACCTTCTC
EST: ATGATCAGAAGACTGTAGCTGCTATGGATGTTCTTGTGCCCAAG GTTGGTGAGTTGGTTGGTGGAAGCCAAAGGGAGGAACGTCTGGACCTTCTCEST: gi|87020011|gb|CI299409.1|CI299409
genomic: ATGATCAGAAGACTGTAGCTGCTATGGATGTTCTTGTGCCCAAGgtaaatataa ... tcttccaaagGTTGGTGAGTTGGTTGGTGGAAGCCAAAGGGAGGAACGTCTGGACCTTCTC
EST: GAAGACTGTAGCTGCTATGGATGTTCTTGTGCCCAAG GTTGGTGAGTTGGTTGGTGGAAGCCAAAGGGAGGAACGTCTGGACCTTCTCEST: gi|88515783|gb|CI443437.1|CI443437
genomic: GAAGACTGTAGCTGCTATGGATGTTCTTGTGCCCAAGgtaaatataa ... tcttccaaagGTTGGTGAGTTGGTTGGTGGAAGCCAAAGGGAGGAACGTCTGGACCTTCTC
EST: TCAATGATGATCAGAAGACTGTAGCTGCTATGGATGTTCTTGTGCCCAAG GTTGGTGAGTTGGTTGGTGGAAGCCAAAGGGAGGAACNTCTGGACCTTCTCEST: gi|89198769|gb|CI003506.1|CI003506
genomic: TCAATGATGATCAGAAGACTGTAGCTGCTATGGATGTTCTTGTGCCCAAGgtaaatataa ... tcttccaaagGTTGGTGAGTTGGTTGGTGGAAGCCAAAGGGAGGAACGTCTGGACCTTCTC
EST: TCAATGATGATCAGAAGACTGTAGCTGCTATGGATGTTCTTGTGCCCAAG GTTGGTGAGTTGGTTGGTGGAAGCCAAAGGGAGGAACGTCTGGACCTTCTCEST: gi|58688377|gb|CK077064.1|CK077064
genomic: TCAATGATGATCAGAAGACTGTAGCTGCTATGGATGTTCTTGTGCCCAAGgtaaatataa ... tcttccaaagGTTGGTGAGTTGGTTGGTGGAAGCCAAAGGGAGGAACGTCTGGACCTTCTC
EST: GTAGCTGCTATGGATGTTCTTGTGCCCAAG GTTGGCGAGTTGGTTGGTGGAAGCCAAAGGGAGGAACGTCTGGACCTTCTC
genomic: GTAGCTGCTATGGATGTTCTTGTGCCCAAGgtaaatataa ... tcttccaaagGTTGGTGAGTTGGTTGGTGGAAGCCAAAGGGAGGAACGTCTGGACCTTCTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGTGATTGTTTATAACTATCCCAAAGAAATAAAGGCATTTTATATGAGACTCAATGATGATCAGAAGACTGTAGCTGCTATGGATGTTCTTGTGCCCAAGgtaaatataaatatttcagacttctagttagttccaatataggttaggtgtaagcatgtaaatgtgttgcatgaacataaattttgaggttaggtgtaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT