1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
ATTTAAAGATTTTCCTCCATCTTCCTTGCCGTTGGTTGAAACTCTGCTTGCAATTGATCCAGCTGAGCGCCAAACTGCTACATCTGCCTTGCAAAGTGAAgtatgtccatatcttttcctccttagcattgtaacagagaatgttagtgtgaagtaacataattgacctgtgatttatgtggtcctttgatacatatcac...
species | Oryza sativa |
transcript | LOC_Os01g27020.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: CAATTGATCCAGCTGAGCGCCAAACTGCTACATCTGCCTTGCAAAGTGAA TTCTTTGCAACTGAGCCTTATGCATGTGATCCATCAAGCTTGCCGACATATEST: gi|2443097|gb|C74868.1|C74868
genomic: CAATTGATCCAGCTGAGCGCCAAACTGCTACATCTGCCTTGCAAAGTGAAgtatgtccat ... agtattgcagTTCTTTGCAACTGAGCCTTATGCATGTGATCCATCAAGCTTGCCGACATAT
EST: CAATTGATCCAGCTGAGCGCCAAACTGCTACATCTGCCTTGCAAAGTGAA TTCTTTGCAACTGAGCCTTATGCATGTGATCCATCAAGCTTGCCGACATATEST: gi|58659085|gb|CK047765.1|CK047765
genomic: CAATTGATCCAGCTGAGCGCCAAACTGCTACATCTGCCTTGCAAAGTGAAgtatgtccat ... agtattgcagTTCTTTGCAACTGAGCCTTATGCATGTGATCCATCAAGCTTGCCGACATAT
EST: CAATTGATCCAGCTGAGCGCCAAACTGCTACATCTGCCTTGCAAAGTGAA TTCTTTGCAACTGAGCCTTATGCATGTGATCCATCAAGCTTGCCGACATATEST: gi|88726999|gb|CI750654.1|CI750654
genomic: CAATTGATCCAGCTGAGCGCCAAACTGCTACATCTGCCTTGCAAAGTGAAgtatgtccat ... agtattgcagTTCTTTGCAACTGAGCCTTATGCATGTGATCCATCAAGCTTGCCGACATAT
EST: CAATTGATCCAGCTGAGCGCCAAACTGCTACATCTGCCTTGCAAAGTGAA TTCTTTGCAACTGAGCCTTATGCATGTGATCCATCAAGCTTGCCGACATATEST: gi|88689180|gb|CI732756.1|CI732756
genomic: CAATTGATCCAGCTGAGCGCCAAACTGCTACATCTGCCTTGCAAAGTGAAgtatgtccat ... agtattgcagTTCTTTGCAACTGAGCCTTATGCATGTGATCCATCAAGCTTGCCGACATAT
EST: CAATTGATCCAGCTGAGCGCCAAACTGCTACATCTGCCTTGCAAAGTGAA TTCTTTGCAACTGAGCCTTATGCATGTGATCCATCAAGCTTGCCGACATAT
genomic: CAATTGATCCAGCTGAGCGCCAAACTGCTACATCTGCCTTGCAAAGTGAAgtatgtccat ... agtattgcagTTCTTTGCAACTGAGCCTTATGCATGTGATCCATCAAGCTTGCCGACATAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATTTAAAGATTTTCCTCCATCTTCCTTGCCGTTGGTTGAAACTCTGCTTGCAATTGATCCAGCTGAGCGCCAAACTGCTACATCTGCCTTGCAAAGTGAAgtatgtccatatcttttcctccttagcattgtaacagagaatgttagtgtgaagtaacataattgacctgtgatttatgtggtcctttgatacatatcac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG