1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
GGTTGACAAGAACGCTGATGGAAGGCTCACAGCAGAAGAGGTTAAGGAGgtaagtcagaaaacacaaaaccgaaaaaaaatataacaatttctatatgttctgtgtttaaatggtattaaatggatgattatgcttttgcag
species | Oryza sativa |
transcript | LOC_Os01g25820.2 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: GGTTGACAAGAACGCTGATGGAAGGCTCACAGCAGAAGAGGTTAAGGAG ATTATTGCCCTTAGTGCATCAGCAAACAAACTTTCCAAGATCAAGGAGCGAEST: gi|29663214|gb|CB659489.1|CB659489
genomic: GGTTGACAAGAACGCTGATGGAAGGCTCACAGCAGAAGAGGTTAAGGAGgtaagtcaga ... gcttttgcagATTATTGCCCTTAGTGCATCAGCAAACAAACTTTCCAAGATCAAGGAGCGA
EST: GGTTGACAAGAACGCTGATGGAAGGCTCACAGCAGAAGAGGTTAAGGAG ATTATTGCCCTTAGTGCATCAGCAAACAAACTTTCCCAGATCAAGGAGCGAEST: gi|29635752|gb|CB640761.1|CB640761
genomic: GGTTGACAAGAACGCTGATGGAAGGCTCACAGCAGAAGAGGTTAAGGAGgtaagtcaga ... gcttttgcagATTATTGCCCTTAGTGCATCAGCAAACAAACTTTCCAAGATCAAGGAGCGA
EST: GGTTGACAAGAACGCTGATGGAAGGCTCACAGCAGAAGAGGTTAAGGAG ATTATTGCCCTTAGTGCATCAGCAAACAAACTTTCCAAGATCAAGGAGCGA
genomic: GGTTGACAAGAACGCTGATGGAAGGCTCACAGCAGAAGAGGTTAAGGAGgtaagtcaga ... gcttttgcagATTATTGCCCTTAGTGCATCAGCAAACAAACTTTCCAAGATCAAGGAGCGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGTTGACAAGAACGCTGATGGAAGGCTCACAGCAGAAGAGGTTAAGGAGgtaagtcagaaaacacaaaaccgaaaaaaaatataacaatttctatatgttctgtgtttaaatggtattaaatggatgattatgcttttgcag
- - - AAGAAC
- - - - - - GCTGAT
- - - - - - - - GATGGA
- - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - AAGGAG