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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAGCGAAATTGATCTACAAACATTTGGCCACATTGTACTTAGGTTTTGTCTTTGATGGCTCTGAAAATGAACTTGCGGTGCTTGATCTTGTGCAAGgtaatctagcacattattattaatgaaactgcttattagttaatgaaattgttggactcatgtgacatgcgaacaaggcaacagccatacagacatggtt...

Basic information

species Oryza sativa
transcript LOC_Os01g25110.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g25110.1 (Oryza sativa), 5'ss of exon 4
lower sequence: GRMZM2G177914_T05 (Zea mays), 5'ss of exon 4
GGAGCGAAATTGATCTACAAACATTTGGCCACATTGTACTTAGGTTTTGTCTTTGATGGCTCTGAAAATGAACTTGCGGTGCTTGATCTTGTGCAAGgtaatctagcacattattattaatgaaa------ctgcttattagttaatgaaattg--ttggactcatgtgacatgcgaacaaggcaacagccatacagacatggtt
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GGAACAAAAATGGTCTACAAGCATTTGGCCACACTATACTTTGTTTTTGTCTTTGATAGCTCTGAGAACGAGCTTGCCATGCTCGACCTCGTACAAGgtaacccaatggcttattgatgaaagaggaaagctttctcacttttctaagagaacggattatattcatgccattcacctgttcggc--ctgtcttactg-ca-----