1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
TGAAGGAGAGTCAGCACCACCCGTAACCTgtaagttcttgtttaaattagaattactgatatacttcctcacgtataccttactagatttgttaagtgaacattcttgtattttacaaatgcag
species | Oryza sativa |
transcript | LOC_Os01g24880.2 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TGAAGGAGAGTCAGCACCACCCGTAACCT TTCATGATTTCATGGGACAGAACTTCACTTCTGAGCATTTGCCTGTATCAGEST: gi|58608025|gb|CK036058.1|CK036058
genomic: TGAAGGAGAGTCAGCACCACCCGTAACCTgtaagttctt ... acaaatgcagTTCATGATTTCATGGGACAGAACTTCACTTCTGAGCATTTGCCTGTATCAG
EST: TGAAGGAGAGTCAGCACCACCCGTAACCT TTCATGATTTCATGGGACAGAACTTCACTTCTGAGCATTTGCCTGTATCAGEST: gi|29656889|gb|CB653164.1|CB653164
genomic: TGAAGGAGAGTCAGCACCACCCGTAACCTgtaagttctt ... acaaatgcagTTCATGATTTCATGGGACAGAACTTCACTTCTGAGCATTTGCCTGTATCAG
EST: TGAAGGAGAGTCAGCACCACCCGTAACCT TTCATGATTTCATGGGACAGAACTTCACTTCTGAGCATTTGCCTGTATCAGEST: gi|29615731|gb|CB620743.1|CB620743
genomic: TGAAGGAGAGTCAGCACCACCCGTAACCTgtaagttctt ... acaaatgcagTTCATGATTTCATGGGACAGAACTTCACTTCTGAGCATTTGCCTGTATCAG
EST: TGAAGGAGAGTCAGCACCACCCGTAACCT TTCATGATTTCATGGGACAGAACTTCACTTCTGAGCATTTGCCTGTATCAG
genomic: TGAAGGAGAGTCAGCACCACCCGTAACCTgtaagttctt ... acaaatgcagTTCATGATTTCATGGGACAGAACTTCACTTCTGAGCATTTGCCTGTATCAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGAAGGAGAGTCAGCACCACCCGTAACCTgtaagttcttgtttaaattagaattactgatatacttcctcacgtataccttactagatttgttaagtgaacattcttgtattttacaaatgcag
- AAGGAG
- AGGAGA