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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TATGGAAAAGTTGGTTTTCCTGACAATGAAATCACTGCCAGAAATATCATTATTGCAACGGGGTCTGTTCCTTTTGTCCCCAATGGCATCGAAATAGATGgtaattactgtttctctttgcaactttgtatcttcaacgtagttaacctactgaagtaaaaaagaatgatttacaataggaactatcatcaaggcatgcc...

Basic information

species Oryza sativa
transcript LOC_Os01g23610.2
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g23610.1 (Oryza sativa), 5'ss of exon 4
lower sequence: GRMZM2G145595_T01 (Zea mays), 5'ss of exon 4
TATGGAAAAGTTGGTTTTCCTGACAATGAAATCACTGCCAGAAATATCATTATTGCAACGGGGTCTGTTCCTTTTGTCCCCAATGGCATCGAAATAGATGgtaattactgtttctctttgcaactttgtatcttcaacgtagttaacctactgaagtaaaaaagaatgatttacaataggaactatcatcaaggcatgcc--
||||| ||||||||||| || ||||||||||||||||| ||||| ||||| ||||| || || |||||||||||||||||||| ||||| ||||||||||||| ||||||||| |  ||| |||||  | |||      | |  ||| |  |   || | |          |  |||  |||  |         || ||   
TATGGGAAAGTTGGTTTCCCAGACAATGAAATCACTGCTAGAAACATCATAATTGCCACTGGATCTGTTCCTTTTGTCCCCAAGGGCATTGAAATAGATGgtagttactgttttt--ttggaacttcatgtctgttttcttgagaactttgtcccgttacatttggcctaatgaaatgagaaacaatgctgttccaagctcc

upper sequence: LOC_Os01g23610.1 (Oryza sativa), 5'ss of exon 4
lower sequence: GLYMA17G03560.1 (Glycine max), 5'ss of exon 4
TATGGAAAAGTTGGTTTTCCTGACAATGAAATCACTGCCAGAAATATCATTATTGCAACGGGGTCTGTTCCTTTTGTCCCCAATGGCATCGAAATAGATGgtaattactg----tttctctttgcaactttgtatcttcaacgtagttaacctactgaagtaaaaaagaatgatttacaataggaactatcatcaaggcatgcc
 | |  |||||||| | | | |||||   | | ||||| | ||||||||| ||||| || || |||||||||||||| || || ||||| ||||| |||||||  ||       ||||  ||||  || ||     || | | |  |    ||| |       ||   | ||  ||   |   |   |      |    |    
AAGGTGAAAGTTGGCTCTTCAGACAAAATAGTAACTGCAAAAAATATCATCATTGCTACTGGTTCTGTTCCTTTTGTTCCTAAGGGCATTGAAATTGATGgtacatatcaatcctttccttttgtgacattaatatttgatcttcctcgttctagttttactgaattcagtggatttagacttgtgttccagctagaaga----
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58675783|gb|CK064470.1|CK064470
EST:     TATTGCAACGGGGTCTGTTCCTTTTGTCCCCAATGGCATCGACATAGATG                         GTAAAACCGTATTTACTAGTGATCATGCACTAAAAGTTGAGTCAGTTCCTG
genomic: TATTGCAACGGGGTCTGTTCCTTTTGTCCCCAATGGCATCGAAATAGATGgtaattactg ... ttttatgcagGTAAAACCGTATTTACTAGTGATCATGCACTAAAACTTGAGTCAGTTCCTG
EST: gi|58684178|gb|CK072865.1|CK072865
EST:     TATTGCAACGGGGTCTGTTCCTTTTGTCCCCAATGGCATCGAAATAGATG                         GTAAAACCGTATTTACTAGTGATCATGCACTAAAACTTGAGTCAGTTCCTG
genomic: TATTGCAACGGGGTCTGTTCCTTTTGTCCCCAATGGCATCGAAATAGATGgtaattactg ... ttttatgcagGTAAAACCGTATTTACTAGTGATCATGCACTAAAACTTGAGTCAGTTCCTG