1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
ACGCGCGTGGCCGCTACCTCTGCATCGGCAGCGTGCTGCACCGGTCCGAGTTTGTTCGCTTGCTTAGGGAGCTCTTCCCCCAGTACCCTATCACCTCCAGgtaacttagaaattttatgattagtgtaatcaaaccgatcgagtgagaaaagattttatatatgtaaaatgtaatccatttcctaaaaaaatatgtaaaa...
species | Oryza sativa |
transcript | LOC_Os01g18120.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TTTGTTCGCTTGCTTAGGGAGCTCTTCCCCCAGTACCCTATCACCTCCAG ATGTAAGGACAACAGTAAGCCAGATGGTGAAACCAATACAAATTCTCTGTAEST: gi|87010182|gb|CI279279.1|CI279279
genomic: TTTGTTCGCTTGCTTAGGGAGCTCTTCCCCCAGTACCCTATCACCTCCAGgtaacttaga ... actgatccagATGTAAGGACAACAGTAAGCCA-ATGGTGAAACC-ATACAAATTCTCTGTA
EST: TTTGTTCGCTTGCTTAGGGAGCTCTTCCCCCAGTACCCTATCACCTCCAG ATGTAAGGACAACAGTAAGCCAATGGTGAAACCATACAAATTCTCTGTACA
genomic: TTTGTTCGCTTGCTTAGGGAGCTCTTCCCCCAGTACCCTATCACCTCCAGgtaacttaga ... actgatccagATGTAAGGACAACAGTAAGCCAATGGTGAAACCATACAAATTCTCTGTACA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACGCGCGTGGCCGCTACCTCTGCATCGGCAGCGTGCTGCACCGGTCCGAGTTTGTTCGCTTGCTTAGGGAGCTCTTCCCCCAGTACCCTATCACCTCCAGgtaacttagaaattttatgattagtgtaatcaaaccgatcgagtgagaaaagattttatatatgtaaaatgtaatccatttcctaaaaaaatatgtaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -agaaaaga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaaaaa