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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTGGTGGTATGGAGTTGTTGGCCACTTGGAGTCATGTGATGGAAGTGAGCACTTTTGTCGGTGTCATCTTAGTGgtgagaatatctttaatcccagggactaaattatttgacttgactaataattacaaagttagttgcatatacatatgcctttttgatgccacgaccccat...

Basic information

species Oryza sativa
transcript LOC_Os01g17390.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g17390.1 (Oryza sativa), 5'ss of exon 4
lower sequence: GRMZM2G130348_T01 (Zea mays), 5'ss of exon 4
GCTGGTGGTATGGAGTTGTTGGCCACTTGGAGTCATGTGATGGAAGTGAGCACTTTTGTCGGTGTCATCTTAGTGgtgagaatatcttt---aatcccagggactaa------attatttgacttgactaataattacaaagttagttgcatatacatatgcctttttgatgccacgaccccat
|||||||||||||||||||||| ||||||||||||||||||||||| || |||||||||||||| |||||||||||||||||| |||     ||  | |   |  ||      | |  |||| ||||||| |||||||| |    | ||  |  |||| ||| |||| |  | ||         
GCTGGTGGTATGGAGTTGTTGGGCACTTGGAGTCATGTGATGGAAGCGAACACTTTTGTCGGTGCCATCTTAGTGgtgagaatctctcctagaaaacaaaaaaaaaagaagctactcattgaattgactagtaattacagaagctggtgtgtgcacatctgc-ttttggtggtcat--------

upper sequence: LOC_Os01g17390.1 (Oryza sativa), 5'ss of exon 4
lower sequence: GLYMA20G08260.1 (Glycine max), 5'ss of exon 4
GCTGGTGGTATGGAGTTGTTGGCCACTTGGAGTCATGTGATGGAAGTGAGCACTTTTGTCGGTGTCATCTTAGTGgtgagaatatctttaatcccagggactaaattatttgacttgactaataattacaaagt--tagttgcatatacatatgcctttttgatgccacgaccccat---
| ||||||||||| ||||| |||||||||||||||||  |||| |||||  | | ||| || ||||||  ||||||||||  ||  || ||   |  |   | ||| ||||    | |  ||| ||| |    |  | |||  | ||   |||   |  || |  | |  | |   |   
GTTGGTGGTATGGTGTTGTAGGCCACTTGGAGTCATGCAATGGGAGTGAAAATTATTGCCGATGTCATAGTAGTGgtgagt-taatttgaacttc--gttttgaatgatttt-tatcatcaatcatttctttttcttggttata-atttttatcattaattcagtcaatcatcttttctt

upper sequence: LOC_Os01g17390.1 (Oryza sativa), 5'ss of exon 4
lower sequence: GLYMA14G04080.1 (Glycine max), 5'ss of exon 4
GCTGGTGGTATGGAGTTGTTGGCCACTTGGAGTCATGTGATGGAAGTGAGCACTTTTGTCGGTGTCATCTTAGTGgtgagaatatctttaatcccagggactaaattatttgacttgactaataattacaaagttagttgcatatacatat-gcctttttgatgccacgaccccat-----
| ||||||||||| ||||| ||||||||||||| ||| ||||| | |||  | |  || || ||||||  ||||||||||   ||   |  |||       ||||| | |    || |  | |  ||| |   ||  |||  | || || | |||||||   |   |  |  |  |     
GTTGGTGGTATGGTGTTGTAGGCCACTTGGAGTTATGCGATGGGAATGAAAATTACTGCCGTTGTCATAGTAGTGgtgagttaatgcattttcc----atttaaatgaatgtgttttatcattctttatat--tttcttggctgtagattttgccttttatgttttatcattcatttaatc

upper sequence: LOC_Os01g17390.1 (Oryza sativa), 5'ss of exon 4
lower sequence: GLYMA07G36360.1 (Glycine max), 5'ss of exon 4
GCTGGTGGTATGGAGTTGTTGGCCACTTGGAGTCATGTGATGGAAGTGAGCACTTTTGTCGGTGTCATCTTAGTGgtgagaatatctttaatcccagggactaaattatttgacttgactaataattacaaagttagttgcatatacatatgcctttttgatgccacgaccccat---
||||||||||||| ||||| |||||||||||||||||  |||| |||||  | | ||| || ||||||  ||||||||||   || |  | | ||         ||| ||    |  |  | |  ||      || |||  | ||   |||   |  || |  |||  | |   |   
GCTGGTGGTATGGTGTTGTAGGCCACTTGGAGTCATGCAATGGGAGTGAAAATTATTGCCGATGTCATAGTAGTGgtgagttaatttgaacttccttttggatgatttttatcatcaatcattgctttttc--ttggttata-atttttatcattaattcagtccatcatcttttttc

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|87040209|gb|CI194831.1|CI194831
EST:     CTTGGAGTCATGTGATGGAAGTGAGCACTTTTGTCGGTGTCATCTTAGTG                         ACACTGTTGTTCTGGAGTTCAACCAATACACACCTGGTTCAAGATGGAGGC
genomic: CTTGGAGTCATGTGATGGAAGTGAGCACTTTTGTCGGTGTCATCTTAGTGgtgagaatat ... tttgtttcagACACTGTTGTTCTGGAGTTCAACCAATACACACCTGGTTCAAGATGGAGGC
EST: gi|86479870|gb|CI122503.1|CI122503
EST:     CTTGGAGTCATGTGATGGAAGTGAGCACTTTTGTCGGTGTCATCTTAGTG                         ACGCTGTTGTTCTGGAGTTCAACCAATACACACCTGGTTCAAGATGGAGGC
genomic: CTTGGAGTCATGTGATGGAAGTGAGCACTTTTGTCGGTGTCATCTTAGTGgtgagaatat ... tttgtttcagACACTGTTGTTCTGGAGTTCAACCAATACACACCTGGTTCAAGATGGAGGC
EST: gi|88994072|gb|CI116036.1|CI116036
EST:     CTTGGAGTCATGTGATGGAAGTGAGCACTTTGGTCGGTGTCATCTTAGTG                         ACACTGTTGTTCTGGAGTTCAACCAATACACACCTGGTTCAAGATGGAGGC
genomic: CTTGGAGTCATGTGATGGAAGTGAGCACTTTTGTCGGTGTCATCTTAGTGgtgagaatat ... tttgtttcagACACTGTTGTTCTGGAGTTCAACCAATACACACCTGGTTCAAGATGGAGGC
EST: gi|87029722|gb|CI274403.1|CI274403
EST:     CTTGGAGTCATGTGATGGAAGTGAGCACTTTTGTCGGTGTCATCTTAGTG                         ACACTGTTGTTCTGGAGTTCAACCAATACACACCTGGTTCAAGATGGAGGC
genomic: CTTGGAGTCATGTGATGGAAGTGAGCACTTTTGTCGGTGTCATCTTAGTGgtgagaatat ... tttgtttcagACACTGTTGTTCTGGAGTTCAACCAATACACACCTGGTTCAAGATGGAGGC
EST: gi|87021508|gb|CI274115.1|CI274115
EST:     CTTGGAGTCATGTGATGGAAGTGAGCACTTTTGTCGGTGTCATCTTAGTG                         ACACTGTTGTTCTGGAGTTCAACCAATACACACCTGGTTCAAGATGGAGGC
genomic: CTTGGAGTCATGTGATGGAAGTGAGCACTTTTGTCGGTGTCATCTTAGTGgtgagaatat ... tttgtttcagACACTGTTGTTCTGGAGTTCAACCAATACACACCTGGTTCAAGATGGAGGC
EST: gi|218491268|gb|FG950311.1|FG950311
EST:     CTTGGAGTCATGTGATGGAAGTGAGCACTTTTGTCGGTGTCATCTTAGTG                         ACACTGTTGTTCTGGAGTTCAACCAATACACACCTGGTTCAAGATGGAGGC
genomic: CTTGGAGTCATGTGATGGAAGTGAGCACTTTTGTCGGTGTCATCTTAGTGgtgagaatat ... tttgtttcagACACTGTTGTTCTGGAGTTCAACCAATACACACCTGGTTCAAGATGGAGGC
EST: gi|86492697|gb|CI135330.1|CI135330
EST:     CTTGGAGTCATGTGATGGAAGTGAGCACTTTTGTCGGTGTCATCTTAGTG                         ACACTGTTGTTCTGGAGTTCAACCAATACACACCTGGTTCAAGATGGAGGC
genomic: CTTGGAGTCATGTGATGGAAGTGAGCACTTTTGTCGGTGTCATCTTAGTGgtgagaatat ... tttgtttcagACACTGTTGTTCTGGAGTTCAACCAATACACACCTGGTTCAAGATGGAGGC
EST: gi|87031194|gb|CI259774.1|CI259774
EST:     CTTGGAGTCATGTGATGGAAGTGAGCACTTTTGTCGGTGTCATCTTAGTG                         ACACTGTTGTTCTGGAGTTCAACCAATACACACCTGGTTCAAGATGGAGGC
genomic: CTTGGAGTCATGTGATGGAAGTGAGCACTTTTGTCGGTGTCATCTTAGTGgtgagaatat ... tttgtttcagACACTGTTGTTCTGGAGTTCAACCAATACACACCTGGTTCAAGATGGAGGC
EST: gi|86477497|gb|CI120130.1|CI120130
EST:     CTTGGAGTCATGTGATGGAAGTGAGCACTTTTGTCGGTGTCATCTTAGTG                         ACACTGTTGTTCTGGAGTTCAACCAATACACACCTGGTTCAAGATGGAGGC
genomic: CTTGGAGTCATGTGATGGAAGTGAGCACTTTTGTCGGTGTCATCTTAGTGgtgagaatat ... tttgtttcagACACTGTTGTTCTGGAGTTCAACCAATACACACCTGGTTCAAGATGGAGGC
EST: gi|86479879|gb|CI122512.1|CI122512
EST:     CTTGGAGTCATGTGATGGAAGTGAGCACTTTTGTCGGTGTCATCTTAGTG                         ACACTGTTGTTCTGGAGTTCAACCAATACACACCTGGTTCAAGATGGAGGC
genomic: CTTGGAGTCATGTGATGGAAGTGAGCACTTTTGTCGGTGTCATCTTAGTGgtgagaatat ... tttgtttcagACACTGTTGTTCTGGAGTTCAACCAATACACACCTGGTTCAAGATGGAGGC
EST: gi|86481774|gb|CI124407.1|CI124407
EST:     CTTGGAGTCATGTGATGGAAGTGAGCACTTTTGTCGGTGTCATCTTAGTG                         ACACTGTTGTTCTGGAGTTCAACCAATACACACCTGGTTCAAGATGGAGGC
genomic: CTTGGAGTCATGTGATGGAAGTGAGCACTTTTGTCGGTGTCATCTTAGTGgtgagaatat ... tttgtttcagACACTGTTGTTCTGGAGTTCAACCAATACACACCTGGTTCAAGATGGAGGC
EST: gi|38478130|gb|CF962263.1|CF962263
EST:     CTTGGAGTCATGTGATGGAAGTGAGCACTTTTGTCGGTGTCATCTTAGTG                         ACACTGTTGTTCTGGAGTTCAACCAATACACACCTGGTTCAAGATGGAGGC
genomic: CTTGGAGTCATGTGATGGAAGTGAGCACTTTTGTCGGTGTCATCTTAGTGgtgagaatat ... tttgtttcagACACTGTTGTTCTGGAGTTCAACCAATACACACCTGGTTCAAGATGGAGGC
EST: gi|3762031|gb|C99279.1|C99279
EST:     CTTGGAGTCATGTGATGGAAGTGAGCACTTTTGTCGGTGTCATCTTAGTG                         ACACTGTTGTTCTGGAGTTCAACCAATACACACCTGGTTCAAGATGGAGGC
genomic: CTTGGAGTCATGTGATGGAAGTGAGCACTTTTGTCGGTGTCATCTTAGTGgtgagaatat ... tttgtttcagACACTGTTGTTCTGGAGTTCAACCAATACACACCTGGTTCAAGATGGAGGC
EST: gi|218494279|gb|FG965188.1|FG965188
EST:     CTTGGAGTCATGTGATGGAAGTGAGCACTTTTGTCGGTGTCATCTTAGTG                         ACACTGTTGTTCTGGAGTTCAACCAATACACACCTGGTTCAAGATGGAGGC
genomic: CTTGGAGTCATGTGATGGAAGTGAGCACTTTTGTCGGTGTCATCTTAGTGgtgagaatat ... tttgtttcagACACTGTTGTTCTGGAGTTCAACCAATACACACCTGGTTCAAGATGGAGGC
EST: gi|86502317|gb|CI144950.1|CI144950
EST:     CTTGGAGTCATGTGATGGAAGTGAGCACTTTTGTCGGTGTCATCTTAGTG                         ACACTGTTGTTCTGGAGTTCAACCAATACACACCTGGTTCAAGATGGAGGC
genomic: CTTGGAGTCATGTGATGGAAGTGAGCACTTTTGTCGGTGTCATCTTAGTGgtgagaatat ... tttgtttcagACACTGTTGTTCTGGAGTTCAACCAATACACACCTGGTTCAAGATGGAGGC
EST: gi|87041818|gb|CI196440.1|CI196440
EST:     CTTGGAGTCATGTGATGGAAGTGAGCACTTTTGTCGGTGTCATCTTAGTG                         ACACTGTTGTTCTGGAGTTCAACCAATACACACCTGGTTCAAGATGGAGGC
genomic: CTTGGAGTCATGTGATGGAAGTGAGCACTTTTGTCGGTGTCATCTTAGTGgtgagaatat ... tttgtttcagACACTGTTGTTCTGGAGTTCAACCAATACACACCTGGTTCAAGATGGAGGC
EST: gi|88198100|gb|CI197950.1|CI197950
EST:     CTTGGAGTCATGTGATGGAAGTGAGCACTTTTGTCGGTGTCATCTTAGTG                         ACACTGTTGTTCTGGAGTTCAACCAATACACACCTGGTTCAAGATGGAGGC
genomic: CTTGGAGTCATGTGATGGAAGTGAGCACTTTTGTCGGTGTCATCTTAGTGgtgagaatat ... tttgtttcagACACTGTTGTTCTGGAGTTCAACCAATACACACCTGGTTCAAGATGGAGGC
EST: gi|87039398|gb|CI194020.1|CI194020
EST:     CTTGGAGTCATGTGATGGAAGTGAGCACTTTTGTCGGTGTCATCTTAGTG                         ACACTGTTGTTCTGGAGTTCAACCAATACACACCTGGTTCAAGATGGAGGC
genomic: CTTGGAGTCATGTGATGGAAGTGAGCACTTTTGTCGGTGTCATCTTAGTGgtgagaatat ... tttgtttcagACACTGTTGTTCTGGAGTTCAACCAATACACACCTGGTTCAAGATGGAGGC
EST: gi|87038592|gb|CI193214.1|CI193214
EST:     CTTGGAGTCATGTGATGGAAGTGAGCACTTTTGTCGGTGTCATCTTAGTG                         ACACTGTTGTTCTGGAGTTCAACCAATACACACCTGGTTCAAGATGGAGGC
genomic: CTTGGAGTCATGTGATGGAAGTGAGCACTTTTGTCGGTGTCATCTTAGTGgtgagaatat ... tttgtttcagACACTGTTGTTCTGGAGTTCAACCAATACACACCTGGTTCAAGATGGAGGC
EST: gi|86480875|gb|CI123508.1|CI123508
EST:     CTTGGAGTCATGTGATGGAAGTGAGCACTTTTGTCGGTGTCATCTTAGTG                         ACACTGTTGTTCTGGAGTTCAACCAATACACACCTGGTTCAAGATGGAGGC
genomic: CTTGGAGTCATGTGATGGAAGTGAGCACTTTTGTCGGTGTCATCTTAGTGgtgagaatat ... tttgtttcagACACTGTTGTTCTGGAGTTCAACCAATACACACCTGGTTCAAGATGGAGGC
EST: gi|87024291|gb|CI257032.1|CI257032
EST:     CTTGGAGTCATGTGATGGAAGTGAGCACTTTTGTCGGTGTCATCTTAGTG                         ACACTGTTGTTCTGGAGTTCAACCAATACACACCTGGTTCAAGATGGAGGC
genomic: CTTGGAGTCATGTGATGGAAGTGAGCACTTTTGTCGGTGTCATCTTAGTGgtgagaatat ... tttgtttcagACACTGTTGTTCTGGAGTTCAACCAATACACACCTGGTTCAAGATGGAGGC
EST: gi|88233336|gb|CI233185.1|CI233185
EST:     TCGGTGTCATCTTAGTG                         ACACTGTTGTTCTGGAGTTCAACCAATACACACCTGGTTCAAGATGGAGGC
genomic: TCGGTGTCATCTTAGTGgtgagaatat ... tttgtttcagACACTGTTGTTCTGGAGTTCAACCAATACACACCTGGTTCAAGATGGAGGC
EST: gi|87038359|gb|CI192981.1|CI192981
EST:     CTTGGAGTCATGTGATGGAAGTGAGCACTTTTGTCGGTGTCATCTTAGTG                         ACACTGTTGTTCTGGAGTTCAACCAATACACACCTGGTTCAAGATGGAGGC
genomic: CTTGGAGTCATGTGATGGAAGTGAGCACTTTTGTCGGTGTCATCTTAGTGgtgagaatat ... tttgtttcagACACTGTTGTTCTGGAGTTCAACCAATACACACCTGGTTCAAGATGGAGGC
EST: gi|86597630|gb|CI274621.1|CI274621
EST:     CTTGGAGTCATGTGATGGAAGTGAGCACTTTTGTCGGTGTCATCTTAGTG                         ACACTGTTGTTCTGGAGTTCAACCAATACACACCTGGTTCAAGATGGAGGC
genomic: CTTGGAGTCATGTGATGGAAGTGAGCACTTTTGTCGGTGTCATCTTAGTGgtgagaatat ... tttgtttcagACACTGTTGTTCTGGAGTTCAACCAATACACACCTGGTTCAAGATGGAGGC
EST: gi|89181064|gb|CI045147.1|CI045147
EST:     TCATCTTAGTG                         ACACTGTTGTTCTGGAGTTCAACCNATACACACCTGGTTCAAGATGGAGGC
genomic: TCATCTTAGTGgtgagaatat ... tttgtttcagACACTGTTGTTCTGGAGTTCAACCAATACACACCTGGTTCAAGATGGAGGC
EST: gi|87033511|gb|CI188135.1|CI188135
EST:     TTGGAGTCATGTGATGGAAGTGAGCACTTTTGTCGGTGTCATCTTAGTG                         ACACTGTTGTTCTGGAGTTCAACCAATACACACCTGGTTCAAGATGGAGGC
genomic: TTGGAGTCATGTGATGGAAGTGAGCACTTTTGTCGGTGTCATCTTAGTGgtgagaatat ... tttgtttcagACACTGTTGTTCTGGAGTTCAACCAATACACACCTGGTTCAAGATGGAGGC
EST: gi|86479001|gb|CI121634.1|CI121634
EST:     TGTCGGTGTCATCTTAGTG                         ACACTGTTGTTCTGGAGTTCAACCAATACACACCTGGTTCAAGATGGAGGC
genomic: TGTCGGTGTCATCTTAGTGgtgagaatat ... tttgtttcagACACTGTTGTTCTGGAGTTCAACCAATACACACCTGGTTCAAGATGGAGGC
EST: gi|86480865|gb|CI123498.1|CI123498
EST:     CTTGGAGTCATGTGATGGAAGTGAGCACTTTTGTCGGTGTCATCTTAGTG                         ACACTGTTGTTCTGGAGTTCAACCAATACACACCTGGTTCAAGATGGAGGC
genomic: CTTGGAGTCATGTGATGGAAGTGAGCACTTTTGTCGGTGTCATCTTAGTGgtgagaatat ... tttgtttcagACACTGTTGTTCTGGAGTTCAACCAATACACACCTGGTTCAAGATGGAGGC
EST: gi|88243537|gb|CI243934.1|CI243934
EST:     GCACTTTTGTCGGTGTCATCTTAGTG                         ACACTGTTGTTCTGGAGTTCAACCAATACACACCTGGTTCAAGATGGAGGC
genomic: GCACTTTTGTCGGTGTCATCTTAGTGgtgagaatat ... tttgtttcagACACTGTTGTTCTGGAGTTCAACCAATACACACCTGGTTCAAGATGGAGGC
EST: gi|87039387|gb|CI194009.1|CI194009
EST:     CTTGGAGTCATGTGATGGAAGTGAGCACTTTTGTCGGTGTCATCTTAGTG                         ACACTGTTGTTCTGGAGTTCAACCAATACACACCTGGTTCAAGATGGAGGC
genomic: CTTGGAGTCATGTGATGGAAGTGAGCACTTTTGTCGGTGTCATCTTAGTGgtgagaatat ... tttgtttcagACACTGTTGTTCTGGAGTTCAACCAATACACACCTGGTTCAAGATGGAGGC
EST: gi|87014139|gb|CI273329.1|CI273329
EST:     CTTGGAGTCATGTGATGGAAGTGAGCACTTTTGTCGGTGTCATCTTAGTG                         ACACTGTTGTTCTGGAGTTCAACCAATACACACCTGGTTCAAGATGGAGGC
genomic: CTTGGAGTCATGTGATGGAAGTGAGCACTTTTGTCGGTGTCATCTTAGTGgtgagaatat ... tttgtttcagACACTGTTGTTCTGGAGTTCAACCAATACACACCTGGTTCAAGATGGAGGC
EST: gi|87021016|gb|CI271823.1|CI271823
EST:     CTTGGAGTCATGTGATGGAAGTGAGCACTTTTGTCGGTGTCATCTTAGTG                         ACACTGTTGTTCTGGAGTTCAACCAATACACACCTGGTTCAAGATGGAGGC
genomic: CTTGGAGTCATGTGATGGAAGTGAGCACTTTTGTCGGTGTCATCTTAGTGgtgagaatat ... tttgtttcagACACTGTTGTTCTGGAGTTCAACCAATACACACCTGGTTCAAGATGGAGGC
EST: gi|88197252|gb|CI197102.1|CI197102
EST:     CTTGGAGTCATGTGATGGAAGTGAGCACTTTTGTCGGTGTCATCTTAGTG                         ACACTGTTGTTCTGGAGTTCAACCAATACACACCTGGTTCAAGATGGAGGC
genomic: CTTGGAGTCATGTGATGGAAGTGAGCACTTTTGTCGGTGTCATCTTAGTGgtgagaatat ... tttgtttcagACACTGTTGTTCTGGAGTTCAACCAATACACACCTGGTTCAAGATGGAGGC
EST: gi|87034723|gb|CI189347.1|CI189347
EST:     GGAGTCATGTGATGGAAGTGAGCACTTTTGTCGGTGTCATCTTAGTG                         ACACTGTTGTTCTGGAGTTCAACCAATACACACCTGGTTCAAGATGGAGGC
genomic: GGAGTCATGTGATGGAAGTGAGCACTTTTGTCGGTGTCATCTTAGTGgtgagaatat ... tttgtttcagACACTGTTGTTCTGGAGTTCAACCAATACACACCTGGTTCAAGATGGAGGC
EST: gi|87015128|gb|CI273526.1|CI273526
EST:     CTTGGAGTCATGTGATGGAAGTGAGCACTTTTGTCGGTGTCATCTTAGTG                         ACACTGTTGTTCTGGAGTTCAACCAATACACACCTGGTTCAAGATGGAGGC
genomic: CTTGGAGTCATGTGATGGAAGTGAGCACTTTTGTCGGTGTCATCTTAGTGgtgagaatat ... tttgtttcagACACTGTTGTTCTGGAGTTCAACCAATACACACCTGGTTCAAGATGGAGGC
EST: gi|86436851|gb|CI118573.1|CI118573
EST:     TCGGTGTTCATCTTAGTG                         ACACTGTTGTTCTGGAGTTCAACCAATACACACCTGGTTCAAGATGGAGGC
genomic: TCGGTG-TCATCTTAGTGgtgagaatat ... tttgtttcagACACTGTTGTTCTGGAGTTCAACCAATACACACCTGGTTCAAGATGGAGGC
EST: gi|86600121|gb|CI258461.1|CI258461
EST:     TGTCGGTGTCATCTTAGTG                         ACACTGTTGTTCTGGAGTTCAACCAATACACACCTGGTTCAAGATGGAGGC
genomic: TGTCGGTGTCATCTTAGTGgtgagaatat ... tttgtttcagACACTGTTGTTCTGGAGTTCAACCAATACACACCTGGTTCAAGATGGAGGC
EST: gi|87014824|gb|CI271423.1|CI271423
EST:     ACTTTTGTCGGTGTCATCTTAGTG                         ACACTGTTGTTCTGGAGTTCAACCAATACACACCTGGTTCAAGATGGAGGC
genomic: ACTTTTGTCGGTGTCATCTTAGTGgtgagaatat ... tttgtttcagACACTGTTGTTCTGGAGTTCAACCAATACACACCTGGTTCAAGATGGAGGC
EST: gi|3762032|gb|C99280.1|C99280
EST:     CTTGGAGTCATGTGATGGAAGTGAGCACTTTTGTCGGTGTCATCTTAGTG                         ACACTGTTGTTCTGGAGTTCAACCAATACACACCTGGTTCAAGATGGAGGC
genomic: CTTGGAGTCATGTGATGGAAGTGAGCACTTTTGTCGGTGTCATCTTAGTGgtgagaatat ... tttgtttcagACACTGTTGTTCTGGAGTTCAACCAATACACACCTGGTTCAAGATGGAGGC
EST: gi|87037831|gb|CI192453.1|CI192453
EST:     CTTGGAGTCATGTGATGGAAGTGAGCACTTTTGTCGGTGTCATCTTAGTG                         ACACTGTTGTTCTGGAGTTCAACCAATACACACCTGGTTCAAGATGGAGGC
genomic: CTTGGAGTCATGTGATGGAAGTGAGCACTTTTGTCGGTGTCATCTTAGTGgtgagaatat ... tttgtttcagACACTGTTGTTCTGGAGTTCAACCAATACACACCTGGTTCAAGATGGAGGC
EST: gi|86827378|gb|CI272800.1|CI272800
EST:     CTTGGAGTCATGTGATGGAAGTGAGCACTTTTGTCGGTGTCATCTTAGTG                         ACACTGTTGTTCTGGAGTTCAACCAATACACACCTGGTTCAAGATGGAGGC
genomic: CTTGGAGTCATGTGATGGAAGTGAGCACTTTTGTCGGTGTCATCTTAGTGgtgagaatat ... tttgtttcagACACTGTTGTTCTGGAGTTCAACCAATACACACCTGGTTCAAGATGGAGGC
EST: gi|29642841|gb|CB647848.1|CB647848
EST:     CTTGGAGTCATGTGATGGAAGTGAGCACTTTTGTCGGTGTCATCTTAGTG                         ACACTGTTGTTCTGGAGTTCAACCAATACACACCTGGTTCAAGATGGAGGC
genomic: CTTGGAGTCATGTGATGGAAGTGAGCACTTTTGTCGGTGTCATCTTAGTGgtgagaatat ... tttgtttcagACACTGTTGTTCTGGAGTTCAACCAATACACACCTGGTTCAAGATGGAGGC
EST: gi|87041064|gb|CI195686.1|CI195686
EST:     CTTGGAGTCATGTGATGGAAGTGAGCACTTTTGTCGGTGTCAACTTAGTG                         ACACTGTTGTTCTGGAGTTCAACCAATACACACCTGGTTCAAGATGGAGGC
genomic: CTTGGAGTCATGTGATGGAAGTGAGCACTTTTGTCGGTGTCATCTTAGTGgtgagaatat ... tttgtttcagACACTGTTGTTCTGGAGTTCAACCAATACACACCTGGTTCAAGATGGAGGC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 67 (upstream exon), 75 (downstream exon)
Score: 114

GCTGGTGGTATGGAGTTGTTGGCCACTTGGAGTCATGTGATGGAAGTGAGCACTTTTGTCGGTGTCATCTTAGTGgtgagaatat ... tttgtttcagACACTGTTGTTCTGGAGTTCAACCAATACACACCTGGTTCAAGATGGAGGCAGGCGCTGGTGAACCGGAAGGACCACAGGGAAGAGGGCAATGAGGGCGA




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GCTGGTGGTATGGAGTTGTTGGCCACTTGGAGTCATGTGATGGAAGTGAGCACTTTTGTCGGTGTCATCTTAGTGgtgagaatatctttaatcccagggactaaattatttgacttgactaataattacaaagttagttgcatatacatatgcctttttgatgccacgaccccat

- - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cgacccc