1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
TGCATTTTCCCCATTGCTGATACATAACTTTGGCTGGCCATCGGTCTTCTACTCCTTTGGGTCTCTGGGTGTATTTTGGTTTTCGACATGGGCGAGCAAGgtatttctcggtgttctgttcaccatttcactcggaattggtgaattactgtattacttttctaatttttttttagttatctcttaaatttgtgatctgcttctataaag
species | Oryza sativa |
transcript | LOC_Os01g17240.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: ACTCCTTTGGGTCTCTGGGTGTATTTTGGTTTTCGACATGGGCGAGCAAG GCGTATAGTAGTCCACTTGAGGATCCAGGAATTAGTGCTGAAGAGAAGAAGEST: gi|29656073|gb|CB652348.1|CB652348
genomic: ACTCCTTTGGGTCTCTGGGTGTATTTTGGTTTTCGACATGGGCGAGCAAGgtatttctcg ... ttctataaagGCGTATAGTAGTCCACTTGAGGATCCAGGAATTAGTGCTGAAGAGAAGAAG
EST: ACTCCTTTGGGTCTCTGGGTGTATTTTGGTTTTCGACATGGGCGAGCAAG GCGTATAGTAGTCCACTTGAGGATCCAGGAATTAGTGCTGAAGAGAAGAAGEST: gi|24468687|gb|CA305636.1|CA305636
genomic: ACTCCTTTGGGTCTCTGGGTGTATTTTGGTTTTCGACATGGGCGAGCAAGgtatttctcg ... ttctataaagGCGTATAGTAGTCCACTTGAGGATCCAGGAATTAGTGCTGAAGAGAAGAAG
EST: ACTCCTTTGGGTCTCTGGGTGTATTTTGGTTTTCGACATGGGCGAGCAAG GCGTATAGTAGTCCACTTGAGGATCCAGGAATTAGTGCTGAAGAGAAGAAGEST: gi|66913930|gb|CX100778.1|CX100778
genomic: ACTCCTTTGGGTCTCTGGGTGTATTTTGGTTTTCGACATGGGCGAGCAAGgtatttctcg ... ttctataaagGCGTATAGTAGTCCACTTGAGGATCCAGGAATTAGTGCTGAAGAGAAGAAG
EST: ACTCCTTTGGGTCTCTGGGTGTATTTTGGTTTTCGACATGGGCGAGCAAG GCGTATAGTAGTCCACTTGEST: gi|58691317|gb|CK080004.1|CK080004
genomic: ACTCCTTTGGGTCTCTGGGTGTATTTTGGTTTTCGACATGGGCGAGCAAGgtatttctcg ... ttctataaagGCGTATAGTAGTCCACTTG
EST: ACTCCTTTGGGTCTCTGGGTGTATTTTGGTTTTCGACATGGGCGAGCAAG GCGTATAGTAGTCCACTTGAGGATCCAGGAATTAGTGCTGAAGAGAAGAAGEST: gi|218504692|gb|FG962736.1|FG962736
genomic: ACTCCTTTGGGTCTCTGGGTGTATTTTGGTTTTCGACATGGGCGAGCAAGgtatttctcg ... ttctataaagGCGTATAGTAGTCCACTTGAGGATCCAGGAATTAGTGCTGAAGAGAAGAAG
EST: ACTCCTTTGGGTCTCTGGGTGTATTTTGGTTTTCGACATGGGCGAGCAAG GCGTATAGTAGTCCACTTGAGGATCCAGGAATTAGTGCTGAAGAGAAGAAG
genomic: ACTCCTTTGGGTCTCTGGGTGTATTTTGGTTTTCGACATGGGCGAGCAAGgtatttctcg ... ttctataaagGCGTATAGTAGTCCACTTGAGGATCCAGGAATTAGTGCTGAAGAGAAGAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGCATTTTCCCCATTGCTGATACATAACTTTGGCTGGCCATCGGTCTTCTACTCCTTTGGGTCTCTGGGTGTATTTTGGTTTTCGACATGGGCGAGCAAGgtatttctcggtgttctgttcaccatttcactcggaattggtgaattactgtattacttttctaatttttttttagttatctcttaaatttgtgatctgcttctataaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG