1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
TTAGTAGACGGAAGGAAGAGATAGTTACTGAAGGAAGTGGCAAGCCATCATGGACAAAAAAACTAATACTTGATAACCGGCTGCTTTGCTCAAAAATAAGgtatgtgatgttatatttcaaaattcgtctataaaactaatggtccaaacattaaataaataagcatattatgcatggctcaggacaaaacattgcatta...
species | Oryza sativa |
transcript | LOC_Os01g16940.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: GCTGCTTTGCTCAAAAATAAG CGAAGAAGCTGGAGAGCTAAACCAAACACTGCTTGAGAACGAGGACGAGAGEST: gi|88224944|gb|CI224860.1|CI224860
genomic: GCTGCTTTGCTCAAAAATAAGgtatgtgatg ... tattttccagCGAAGAAGCTGGAGAGCTAAACCAAACACTGCTTGAGAACGAGGACGAGAG
EST: CGGCTGCTTTGCTCAAAAATAAG CGAAGAAGCTGGAGAGCTAAACCAAACACTGCTTGAGAACGAGGACGAGAGEST: gi|88845664|gb|CI008661.1|CI008661
genomic: CGGCTGCTTTGCTCAAAAATAAGgtatgtgatg ... tattttccagCGAAGAAGCTGGAGAGCTAAACCAAACACTGCTTGAGAACGAGGACGAGAG
EST: TGGACNNNNNNNCTAATACTTGATAACCGGCTGCTTTGCTCAAAAATAAG CGAAGAAGCTGGAGAGCTAAACCAAACACTGCTTGAGAACGAGGACGAGAGEST: gi|88215792|gb|CI215641.1|CI215641
genomic: TGGACAAAAAAACTAATACTTGATAACCGGCTGCTTTGCTCAAAAATAAGgtatgtgatg ... tattttccagCGAAGAAGCTGGAGAGCTAAACCAAACACTGCTTGAGAACGAGGACGAGAG
EST: TGGACNNNNNNNCTAATACTTGATAACCGGCTGCTTTGCTCAAAAATAAG CGAAGAAGCTGGAGAGCTAAACCAAACACTGCTTGAGAACGAGGACGAGAGEST: gi|86423838|gb|CI062599.1|CI062599
genomic: TGGACAAAAAAACTAATACTTGATAACCGGCTGCTTTGCTCAAAAATAAGgtatgtgatg ... tattttccagCGAAGAAGCTGGAGAGCTAAACCAAACACTGCTTGAGAACGAGGACGAGAG
EST: GGGACGAAAAAACTAATACTTGATAACCGGCTGCTTTGCTCAAAAATAAG CGAAGAAGCTGGAGAGCTAAACCAAACACTGCTTGAGAACGAGGACGAGAGEST: gi|88297122|gb|CI545212.1|CI545212
genomic: -GGACAAAAAAACTAATACTTGATAACCGGCTGCTTTGCTCAAAAATAAGgtatgtgatg ... tattttccagCGAAGAAGCTGGAGAGCTAAACCAAACACTGCTTGAGAACGAGGACGAGAG
EST: AAAACTAATACTTGATAACCGGCTGCTTTGCTCAAAAATAAG CGAAGAAGCTGGAGAGCTAAACCAAACACTGCCTGAGAACGAGGACGAGAGEST: gi|32948010|gb|BP184582.1|BP184582
genomic: AAAACTAATACTTGATAACCGGCTGCTTTGCTCAAAAATAAGgtatgtgatg ... tattttccagCGAAGAAGCTGGAGAGCTAAACCAAACACTGCTTGAGAACGAGGACGAGAG
EST: TGGACNNNNNNNCTAATACTTGATAACCGGCTGCTTTGCTCAAAAATAAG CGAAGAAGCTGGAGAGCTAAACCAAACACTGCTTGAGAACGAGGACGAGAGEST: gi|88217983|gb|CI217832.1|CI217832
genomic: TGGACAAAAAAACTAATACTTGATAACCGGCTGCTTTGCTCAAAAATAAGgtatgtgatg ... tattttccagCGAAGAAGCTGGAGAGCTAAACCAAACACTGCTTGAGAACGAGGACGAGAG
EST: TGGACNNNNNNNCTAATACTTGATAACCGGCTGCTTTGCTCAAAAATAAG CGAAGAAGCTGGAGAGCTAAACCAAACACTGCTTGAGAACGAGGACGAGAG
genomic: TGGACAAAAAAACTAATACTTGATAACCGGCTGCTTTGCTCAAAAATAAGgtatgtgatg ... tattttccagCGAAGAAGCTGGAGAGCTAAACCAAACACTGCTTGAGAACGAGGACGAGAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTAGTAGACGGAAGGAAGAGATAGTTACTGAAGGAAGTGGCAAGCCATCATGGACAAAAAAACTAATACTTGATAACCGGCTGCTTTGCTCAAAAATAAGgtatgtgatgttatatttcaaaattcgtctataaaactaatggtccaaacattaaataaataagcatattatgcatggctcaggacaaaacattgcatta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaataaa