1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
CAGCTCTCTGCCTGCTAATGGAGAATCGGTTAGAAAGGATAGTTCTGACAGCGATAGGAGCAAGTTTGAGGATAAGAAAAAGCCTGAACTTAGTCAAAATgtaacatctcgagctataattacatgcttaatattatttggcatcatctaactgggttgttcctattcag
species | Oryza sativa |
transcript | LOC_Os01g16414.4 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: GCGATAGGAGCAAGTTTGAGGATAAGAAAAAGCCTGAACTTAGTCAAAAT GAATTTGTGTTGACCAATGAGAGGTTCCTAGTGCCAGAGATGCTTTTCCATEST: gi|86496996|gb|CI139629.1|CI139629
genomic: GCGATAGGAGCAAGTTTGAGGATAAGAAAAAGCCTGAACTTAGTCAAAATgtaacatctc ... tcctattcagGAATTTGTGTTGACCAATGAGAGGTTCCTAGTGCCAGAGATGCTTTTCCAT
EST: GCGATAGGAGCAAGTTTGAGGATAAGAAAAAGCCTGAACTTAGTCAAAAT GAATTTGTGTTGACCAATGAGAGGTTCCTAGTGCCAGAGATGCTTTTCCAT
genomic: GCGATAGGAGCAAGTTTGAGGATAAGAAAAAGCCTGAACTTAGTCAAAATgtaacatctc ... tcctattcagGAATTTGTGTTGACCAATGAGAGGTTCCTAGTGCCAGAGATGCTTTTCCAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAGCTCTCTGCCTGCTAATGGAGAATCGGTTAGAAAGGATAGTTCTGACAGCGATAGGAGCAAGTTTGAGGATAAGAAAAAGCCTGAACTTAGTCAAAATgtaacatctcgagctataattacatgcttaatattatttggcatcatctaactgggttgttcctattcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA