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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCTGGCACTTCGGAGAATACAAAGGTTGTCATTGATCATGGGGCTGTACCAATATTTGTGAAGCTTCTTGGTTCTTCTAGTGATGATGTTCGTGAGCAGgtatccgatcatctcctgacttgtctttgtgctttctgtacttccttgatattattttgattgagtgcattgttggagttattaatgtttttacctcttgaaaaaaaattgaag

Basic information

species Oryza sativa
transcript LOC_Os01g14950.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g14950.1 (Oryza sativa), 5'ss of exon 4
lower sequence: GRMZM2G088231_T01 (Zea mays), 5'ss of exon 4
ATCTGGCACTTCGGAGAATACAAAGGTTGTCATTGATCATGGGGCTGTACCAATATTTGTGAAGCTTCTTGGTTCTTCTAGTGATGATGTTCGTGAGCAGgtatccgatcatctcctgacttgtctttgtgctttctgtacttccttgatattattttgattgagtgcattgttggagttattaatgtttttacctcttgaaaaaaaattgaag
 ||||||||||| || |||||||||| ||| ||||| ||||||||||| || |||||||||||||||||||| |||  ||||||||||||||||||||||||||    |||           ||||||  ||||||| | |||  |   |  ||||| |   | |||   |||   ||| ||     ||||  |   || |||| || |  |||
TTCTGGCACTTCAGAAAATACAAAGGCTGTTATTGACCATGGGGCTGTTCCTATATTTGTGAAGCTTCTTGGGTCTGGTAGTGATGATGTTCGTGAGCAGgtatttattca-----------gtcttttggctttct-tgctttttatttgctatttagga-gtgtgtgatgtgacagtaat--gcattttctctgttttaaaacaattaaaag

upper sequence: LOC_Os01g14950.1 (Oryza sativa), 5'ss of exon 4
lower sequence: GRMZM2G091119_T02 (Zea mays), 5'ss of exon 4
ATCTGGCACTTCGGAGAATACAAAGGTTGTCATTGATCATGGGGCTGTACCAATATTTGTGAAGCTTCTTGGTTCTTCTAGTGATGATGTTCGTGAGCAGgtatccgatcatctcctgacttgtctttgtgctttctgtacttccttgatattattttgattgagtgcattgttggagttattaatgtttttacctcttgaaaaaaaattgaag
 ||||||||||| || |||||||||||||| ||||||||||||||||| || |||||||||||||||||||| |||  ||||||||||||||||||||||||||    | |  || |  |||    ||||||||||| || || ||       |||| |   ||||| ||  |  | |  | |    ||| |   | || ||| || |   |||
TTCTGGCACTTCAGAAAATACAAAGGTTGTTATTGATCATGGGGCTGTTCCTATATTTGTGAAGCTTCTTGGGTCTGGTAGTGATGATGTTCGTGAGCAGgtatttatttag-tcttatctt----ttgtgctttct-tattttct-------atttag---gagtgtatgatgtgtgacagtgccctttctctgttttaaaacaatacaaaag

upper sequence: LOC_Os01g14950.1 (Oryza sativa), 5'ss of exon 4
lower sequence: GLYMA07G37180.1 (Glycine max), 5'ss of exon 5
ATCTGGCACTTCGGAGAATACAAAGGTTGTCATTGATCATGGGGCTGTACCAATATTTGTGAAGCTTCTTGGTTCTTCTAGTGATGATGTTCGTGAGCAGgtatccgatcatctcctgacttgtctttgtgctttctgtacttccttgatattattttgattgag-tgcattgttggagttattaatgtttttacctcttgaaaaaaaattgaag
|||||| ||||| ||||| || ||||| || |||||||| ||||| || || |||||||| ||||| ||  ||||  | |||||||||||||| ||||||||||    | || |    |     ||        | |  |  |  || || ||| |    |  |  |  ||| |  ||  |   |                              
ATCTGGGACTTCTGAGAACACTAAGGTGGTAATTGATCACGGGGCAGTTCCTATATTTGTCAAGCTACTCAGTTCACCCAGTGATGATGTTCGGGAGCAGgtat---gttatgtttgaatgcagctgcag---ctgtacaactttttaattttactgaactgaaaattaattctctgaaattccag-----------------------------

upper sequence: LOC_Os01g14950.1 (Oryza sativa), 5'ss of exon 4
lower sequence: GLYMA19G41770.1 (Glycine max), 5'ss of exon 4
ATCTGGCACTTCGGAGAATACAAAGGTTGTCATTGATCATGGGGCTGTACCAATATTTGTGAAGCTTCTTGGTTCTTCTAGTGATGATGTTCGTGAGCAGgtatccgatcatctcctgacttgtctttgtgctttctgtacttccttgatattattttgattgagtgcattgttggagttattaatgtttttacctcttgaaaaaaaattgaag
 ||||| ||||| || || || ||||| || ||||||||||| ||||| ||||| ||||| ||||| ||||||||  | | ||||||||| ||||| ||||||      ||| || ||     |  |  |   ||   |  |   |  | |||||    |||      ||    | |   |||| | ||| |     || |  | |||      
TTCTGGAACTTCTGAAAACACCAAGGTGGTAATTGATCATGGTGCTGTCCCAATTTTTGTAAAGCTCCTTGGTTCACCCAATGATGATGTCCGTGAACAGgta------catttcgtg-taccttatcatatatttgtttatcaataaaaattatacacattcttaaaatga--gaacagattactttttatgttgtttaaccagaaaa-----

upper sequence: LOC_Os01g14950.1 (Oryza sativa), 5'ss of exon 4
lower sequence: GLYMA09G04430.1 (Glycine max), 5'ss of exon 4
ATCTGGCACTTCGGAGAATACAAAGGTTGTCATTGATCATGGGGCTGTACCAATATTTGTGAAGCTTCTTGGTTCTTCTAGTGATGATGTTCGTGAGCAGgtatccgatcatctcctgacttgtctttgtgctttctgtacttccttgatattattttgattgagtgcattgttggagttattaatgtttttacctcttgaaaaaaaattgaag
|||||| ||||| |||||||| ||||| || |||||||||||||| || || |||||||| ||||| ||| ||||  | |||||||||||||| ||||||||||    |     | ||| | ||  | |||||  |  |||||  ||  |   ||||||   |||    ||    || | | |||   | | |  |                  
ATCTGGAACTTCTGAGAATACCAAGGTGGTGATTGATCATGGGGCAGTTCCGATATTTGTCAAGCTACTTAGTTCGCCCAGTGATGATGTTCGGGAGCAGgtat---gttgatgcatgaat-gtggtagtgctgacattacttgttt--tgaaattttggccgagc---ttaccagaat-actaaaactctgaaattccag-------------

upper sequence: LOC_Os01g14950.1 (Oryza sativa), 5'ss of exon 4
lower sequence: GLYMA03G39210.1 (Glycine max), 5'ss of exon 5
ATCTGGCACTTCGGAGAATACAAAGGTTGTCATTGATCATGGGGCTGTACCAATATTTGTGAAGCTTCTTGGTTCTTCTAGTGATGATGTTCGTGAGCAGgtatccgat-catctcctgacttgtctttgtgctttctgtacttccttgatattattttgattgagtgcattgttggagttattaatgtttttacctcttgaaaaaaaattgaag
 ||||| || || || || || |||||  | ||||||||||| ||||| ||||| ||||| ||||| ||||||||| | ||||||||||| ||||| ||||||         |  | || | | | |||||  | ||  ||     |  |||  | ||  | ||||  ||           |||| | ||| |     ||||   |||| ||   
TTCTGGAACATCTGAAAACACTAAGGTGATAATTGATCATGGTGCTGTCCCAATTTTTGTAAAGCTACTTGGTTCTCCCAGTGATGATGTCCGTGAACAGgtacatttcatgtaccttgtcatatatttgt-ttatcaataaaaatt--atac-acttaaaatgagaacaa----------attactttttatgttgtttgacccaaaaatgtg-

upper sequence: LOC_Os01g14950.1 (Oryza sativa), 5'ss of exon 4
lower sequence: GLYMA10G29000.1 (Glycine max), 5'ss of exon 4
ATCTGGCACTTCGGAGAATACAAAGGTTGTCATTGATCATGGGGCTGTACCAATATTTGTGAAGCTTCTTGGTTCTTCTAGTGATGATGTTCGTGAGCAGgtatccgatcatctcctgacttgtctttgtgctttctgtacttccttgatattattttgattgagtgcattgttg-gagttattaatgtttttacctcttgaaaaaaaattgaag
 ||||| || || || || ||||||||||| |||||||| |||||||| ||||| || |||||||| |||| |||| ||||||||||||| || || |||||||   ||  | |  | |  | |     | | |||  |   ||  ||| ||||    | |  ||  | |  |||  |   |    ||||  |   | ||               
TTCTGGAACGTCTGAAAACACAAAGGTTGTGATTGATCACGGGGCTGTCCCAATTTTCGTGAAGCTACTTGCTTCTCCTAGTGATGATGTCCGCGAACAGgtatattattctttattcatatattaacataccttc-atctgtctatgaaattaaaagggt--agctcttgattgcaaaacacgtttgttcatgtttattttt------------

upper sequence: LOC_Os01g14950.1 (Oryza sativa), 5'ss of exon 4
lower sequence: GLYMA15G15480.1 (Glycine max), 5'ss of exon 4
ATCTGGCACTTCGGAGAATACAAAGGTTGTCATTGATCATGGGGCTGTACCAATATTTGTGAAGCTTCTTGGTTCTTCTAGTGATGATGTTCGTGAGCAGgtatccgatcatctcctgacttgtctttgtgctttctgtacttccttgatattattttgattgagtgcattgttggagttattaatgtttttacctcttgaaaaaaaattgaag
|||||| ||||| |||||||| ||||| || |||||||||||||| || || |||||||| || || ||| ||||  | |||||||||||||| ||||||||||   ||     | ||| | ||  | |||||     | |||  ||  |   |||||||  |||    |||   || |  |  || |||  |  ||  |              
ATCTGGAACTTCTGAGAATACCAAGGTGGTGATTGATCATGGGGCGGTGCCGATATTTGTCAAACTACTTAGTTCGCCCAGTGATGATGTTCGGGAGCAGgtat---attgatacatgaat-gtggtagtgctgaaatttcttgttt--tggaattttgaccgagc---ttgcctgaatactatatctttgaaattccag--------------

upper sequence: LOC_Os01g14950.1 (Oryza sativa), 5'ss of exon 4
lower sequence: GLYMA17G03430.1 (Glycine max), 5'ss of exon 4
ATCTGGCACTTCGGAGAATACAAAGGTTGTCATTGATCATGGGGCTGTACCAATATTTGTGAAGCTTCTTGGTTCTTCTAGTGATGATGTTCGTGAGCAGgtatccgatcatctcctgacttgtctttgtgctttctgtacttccttgatattattttgattgag-tgcattgttggagttattaatgtttttacctcttgaaaaaaaattgaag
|||||| ||||| ||||| || ||||| || |||||||||||||| || || |||||||| ||||| ||| ||||  |||||||||||||||| ||||||||||    | || |    |    ||| |      | |  |  |  || || ||| |    |  |  |  ||| |  ||  |   |                              
ATCTGGGACTTCTGAGAACACTAAGGTGGTAATTGATCATGGGGCAGTTCCTATATTTGTCAAGCTACTTAGTTCACCTAGTGATGATGTTCGGGAGCAGgtat---gttatgtttgaatgcatctgtag---ctgtacaactttttaattttactgaactgaaaattaattctctgaaattccag-----------------------------

upper sequence: LOC_Os01g14950.1 (Oryza sativa), 5'ss of exon 4
lower sequence: GLYMA20G38320.1 (Glycine max), 5'ss of exon 4
ATCTGGCACTTCGGAGAATACAAAGGTTGTCATTGATCATGGGGCTGTACCAATATTTGTGAAGCTTCTTGGTTCTTCTAGTGATGATGTTCGTGAGCAGgtatccgatcatctcctgacttgtctttgtgctttctgtacttccttgatattattttgattgagtgcattgttggagttattaatgtttttacctcttgaaaaaaaattgaag
 ||||| || || || || || ||||||||||||||||| |||||||| ||||| || |||||||| |||| |||| ||||||||||||| ||||| |||||||   ||    |  | |  | |     | | |||  |   ||  |||          | ||   | | | | |||   | |  | |||||   |  ||| ||  || | || 
TTCTGGGACGTCTGAAAACACCAAGGTTGTCATTGATCACGGGGCTGTCCCAATTTTCGTGAAGCTACTTGCTTCTCCTAGTGATGATGTCCGTGAACAGgtatgttattcatttttcatatattagcataccttc-atctgtctatga----------aatgcaagaactttgggatccagt--ttttttttttttgtgataatgaaattaa-

upper sequence: LOC_Os01g14950.1 (Oryza sativa), 5'ss of exon 4
lower sequence: AT4G16143.1 (Arabidopsis thaliana), 5'ss of exon 3
ATCTGGCACTTCGGAGAATACAAAGGTTGTCATTGATCATGGGGCTGTACCAATATTTGTGAAGCTTCTTGGTTCTTCTAGTGATGATGTTCGTGAGCAGgtatccgatcatctcctgacttgtctttgtg-ctttctgtacttcc--ttgatattatttt---gattgagtgcattgttggagttattaatgtttttacctcttgaaaaaaaattgaag
 ||||| ||||| |||||||||||||| |||||||| ||||| ||||| || || |||||  | ||  | | ||||   ||||||||||| ||||||||||||    ||    |  ||  || |  |  || ||   | ||||  |  ||    || ||||   ||   ||    || |     || ||  | | || | || || |     ||      
TTCTGGGACTTCAGAGAATACAAAGGTGGTCATTGAACATGGTGCTGTTCCGATTTTTGTTCAACTATTGGCTTCTCAGAGTGATGATGTCCGTGAGCAGgtaagatatgtgtttatggttttttctcatgactcaatatactgtcaattttgtttgttttcgggaacaagcatgttctaaagcttgtttgtttcttaatcttttcatgtgtaag-----

upper sequence: LOC_Os01g14950.1 (Oryza sativa), 5'ss of exon 4
lower sequence: AT3G06720.2 (Arabidopsis thaliana), 5'ss of exon 4
ATCTGGCACTTCGGAGAATACAAAGGTTGTCATTGATCATGGGGCTGTACCAATATTTGTGAAGCTTCTTGGTTCTTCTAGTGATGATGTTCGTGAGCAGgtatccgatcatctcctgacttgtctttgtgctttctgtacttccttgatattattttgattgagtgcattgttggagttattaatgtttttacctcttgaaaaaaaattgaag
|||||| || |||||  | || |||||||| || |||||    ||||| ||||| |||||  ||||||||| |||  |||| |||||||||||||| |||||||  || | |||  |||||      |||  | ||  |  ||    || |||||    |||||     ||||   |        || | |||    ||      ||  || ||
ATCTGGAACATCGGATCACACTAAGGTTGTAATCGATCACAATGCTGTTCCAATCTTTGTTCAGCTTCTTGCTTCCCCTAGCGATGATGTTCGTGAACAGgtatg-gaacttctgatgactacagaatgtcttctcatttattatgagagattatgc-aattgaaaattttgtgaaaccc-----tgatcttaagatttcgctctaacctgcag

upper sequence: LOC_Os01g14950.1 (Oryza sativa), 5'ss of exon 4
lower sequence: Vv07s0005g01100.t01 (Vitis vinifera), 5'ss of exon 4
ATCTGGCACTTCGGAGAATACAAAGGTTGTCATTGATCATGGGGCTGTACCAATATTTGTGAAGCTTCTTGGTTCTTCTAGTGATGATGTTCGTGAGCAGgtatccgatcat-ctcctgacttgtctttgtgctttctgtacttccttgatat-----tattttgattgagtgcattgttggagttattaatgtttttacctcttgaaaaaaaattgaag---------------------------
 ||||| || || || || || |||||||| || |||||||| || || || || ||||||||||||||||||||    | ||||||||| ||||| |||||||    | |  |   ||||  ||   |   |      |  || |||||| |      |||     | |||   ||||   |    | | ||  | ||  |   ||  |  ||||  ||                           
TTCTGGAACATCAGAAAACACCAAGGTTGTAATAGATCATGGAGCAGTTCCGATTTTTGTGAAGCTTCTTGGTTCCCAAAATGATGATGTCCGTGAACAGgtatatattaaaacagatgacaggttcat---ccccgcatgttttcttgatgtgtttgcattgcagctcagtcagttgtcaaatagttcattgcctataagt---gatgaggaatttgagctttttagttttgccttttttctgtag

upper sequence: LOC_Os01g14950.1 (Oryza sativa), 5'ss of exon 4
lower sequence: Vv05s0077g01430.t01 (Vitis vinifera), 5'ss of exon 4
ATCTGGCACTTCGGAGAATACAAAGGTTGTCATTGATCATGGGGCTGTACCAATATTTGTGAAGCTTCTTGGTTCTTCTAGTGATGATGTTCGTGAGCAGgtatccgatcatctcctgacttgtctttgtgctttctgtacttccttgatattattt--tgattgagtgcattgttggagttattaatgtttttacctcttgaaaaaaaattgaag
 ||||| || || || ||||| ||||| || ||||||||||| || || ||||||||||||||||| ||||||||| | |||||||||||||| ||||||||      |       ||  |       ||  |     | |   ||  |||| ||||  ||    |    |   | |  ||| |  |||   |    |    |||   |       
TTCTGGGACATCAGAAAATACCAAGGTGGTAATTGATCATGGAGCAGTGCCAATATTTGTGAAGCTACTTGGTTCTCCAAGTGATGATGTTCGGGAGCAGgtgcttatttgaaatttgtttgaagcccgttttaagattgcagactgtatatcatttattggcataacatagattcgaggttttatatgaaatcctttaccaaaatgtag------

upper sequence: LOC_Os01g14950.1 (Oryza sativa), 5'ss of exon 4
lower sequence: Vv14s0060g01510.t01 (Vitis vinifera), 5'ss of exon 4
ATCTGGCACTTCGGAGAATACAAAGGTTGTCATTGATCATGGGGCTGTACCAATATTTGTGAAGCTTCTTGGTTCTTCTAGTGATGATGTTCGTGAGCAGgtatccgatcatctcctgacttgtctttgtgctttctg-tacttccttgatattattttgattgagtgcattgttggagttattaatgtttttacctcttgaaaaaaaattgaag
 ||||| || || || || || ||||| || ||||||||||||||||| ||  | |||||||| |||||||||||| | ||||||||||||||||| ||||||      ||| |  |||      ||  | | | ||  ||     || |  ||| ||||  |   |  ||| ||| | || ||  || | |      ||| ||           
TTCTGGGACATCTGACAACACTAAGGTGGTAATTGATCATGGGGCTGTCCCGGTGTTTGTGAAACTTCTTGGTTCTCCAAGTGATGATGTTCGTGAACAGgta------catattttgaagaacattcctacctgctaatatagtttttagtttagtttgtcttttta-attattgcatttttttttggtatgcttgtttggaatgt--------

upper sequence: LOC_Os01g14950.1 (Oryza sativa), 5'ss of exon 4
lower sequence: PP1S43_141V6.1 (Physcomitrella patens), 5'ss of exon 5
ATCTGGCACTTCGGAGAATACAAAGGTTGTCATTGATCATGGGGCTGTACCAATATTTGTGAAGCTTCTTGGTTCTTCTAGTGATGATGTTCGTGAGCAGgtatccgatcatctcctgacttgtctttgtgctttctgtacttccttgatattattttgattgagtgcattgttggagttattaatgtttttacctcttgaaaaaaaattgaag
||| || || || ||  | ||    ||||| ||||| ||||||||||| || || |||||  |||||||  | ||| ||||||| |||||||||||||||||||  ||  ||    ||| ||     | |   | ||  ||| ||   |  |  | |  ||  | || || |||    |  || |  ||| || ||  || |  |         
ATCCGGAACATCTGATCACACTCGTGTTGTGATTGAGCATGGGGCTGTTCCTATCTTTGTTCAGCTTCTGAGCTCTCCTAGTGACGATGTTCGTGAGCAGgtat--ga--attgaatgattttgggatattactgcttaactgcc---aggtgttctgcatctaatggatagttt---tgcttcagatttctatctggtgtatcactgca----

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58682672|gb|CK071359.1|CK071359
EST:     CAATATTTGTGAAGCTTCTTGGTTCTTCTAGTGATGATGTTCGTGAGCAG                         GCTGTATGGGCATTGGGCAATGTTGCTGGTGATTCCCCTAA
genomic: CAATATTTGTGAAGCTTCTTGGTTCTTCTAGTGATGATGTTCGTGAGCAGgtatccgatc ... aaaattgaagGCTGTATGGGCATTGGGCAATGTTGCTGGTGATTCCCCTAA
EST: gi|29662761|gb|CB659036.1|CB659036
EST:     CAATATTTGTGAAGCTTCTTGGTTCTTCTAGTGATGATGTTCGTGAGCAG                         GCTGTATGGGCATTGGGCAATGTTGCTGGTGATTCCCCTAAGTGCCGTGAC
genomic: CAATATTTGTGAAGCTTCTTGGTTCTTCTAGTGATGATGTTCGTGAGCAGgtatccgatc ... aaaattgaagGCTGTATGGGCATTGGGCAATGTTGCTGGTGATTCCCCTAAGTGCCGTGAC
EST: gi|88761467|gb|CI771023.1|CI771023
EST:     CAATATTTGTGAAGCTTCTTGGTTCTTCTAGTGATGATGTTCGTGAGCAG                         GCTGTATGGGCATTGGGCAATGTTGCTGGTGATTCCCCTAAGTGCCGTGAC
genomic: CAATATTTGTGAAGCTTCTTGGTTCTTCTAGTGATGATGTTCGTGAGCAGgtatccgatc ... aaaattgaagGCTGTATGGGCATTGGGCAATGTTGCTGGTGATTCCCCTAAGTGCCGTGAC
EST: gi|58608932|gb|CK036965.1|CK036965
EST:     CAATATTTGTGAAGCTTCTGGGTTCTTCTAGTGATGATGTTCGTGAGCAG                         GCTGTATGGGCATTGGGCAATGTTGCTGGTGATTCCCCTAAGTGCCGTGAC
genomic: CAATATTTGTGAAGCTTCTTGGTTCTTCTAGTGATGATGTTCGTGAGCAGgtatccgatc ... aaaattgaagGCTGTATGGGCATTGGGCAATGTTGCTGGTGATTCCCCTAAGTGCCGTGAC
EST: gi|86851083|gb|CI311301.1|CI311301
EST:     CAATATTTGTGAAGCTTCTTGGTTCTTCTAGTGATGATGTTCGTGAGCAG                         GCTGTATGGGCATTGGGCAATGTTGCTGGTGATTCCCCTAAGTGCCGTGAC
genomic: CAATATTTGTGAAGCTTCTTGGTTCTTCTAGTGATGATGTTCGTGAGCAGgtatccgatc ... aaaattgaagGCTGTATGGGCATTGGGCAATGTTGCTGGTGATTCCCCTAAGTGCCGTGAC
EST: gi|29622103|gb|CB627114.1|CB627114
EST:     CAATATTTGTGAAGCTTCTTGGTTCTTCTAGTGATGATGTTCGTGAGCAG                         GCTGTATGGGCATTGGGCAATGTTGCTGGTGATTCCCCTAAGTGCCGTGAC
genomic: CAATATTTGTGAAGCTTCTTGGTTCTTCTAGTGATGATGTTCGTGAGCAGgtatccgatc ... aaaattgaagGCTGTATGGGCATTGGGCAATGTTGCTGGTGATTCCCCTAAGTGCCGTGAC
EST: gi|218497818|gb|FG965121.1|FG965121
EST:     CAATATTTGTGAAGCTTCTTGGTTCTTCTAGTGATGATGTTCGTGAGCAG                         GCTGTATGGGCATTGGGCAATGTTGCTGGTGATTCCCCTAAGTGCCGTGAC
genomic: CAATATTTGTGAAGCTTCTTGGTTCTTCTAGTGATGATGTTCGTGAGCAGgtatccgatc ... aaaattgaagGCTGTATGGGCATTGGGCAATGTTGCTGGTGATTCCCCTAAGTGCCGTGAC
EST: gi|29677816|gb|CB674091.1|CB674091
EST:     CAATATTTGTGAAGCTTCTTGGTTCTTCTAGTGATGATGTTCGTGAGCAG                         GCTGTATGGGCATTGGGCAATGTTGCTGGTGATTCCCCTAAGTGCCGTGAC
genomic: CAATATTTGTGAAGCTTCTTGGTTCTTCTAGTGATGATGTTCGTGAGCAGgtatccgatc ... aaaattgaagGCTGTATGGGCATTGGGCAATGTTGCTGGTGATTCCCCTAAGTGCCGTGAC
EST: gi|58676970|gb|CK065657.1|CK065657
EST:     CAATATTTGTGAAGCTTCTTGGTTCTTCTAGTGATGATGTTCGTGAGCAG                         GCTGTATGGGCATTGGGCAATGTTGCTGGTGATTCCCCTAAGTGCCGTGAC
genomic: CAATATTTGTGAAGCTTCTTGGTTCTTCTAGTGATGATGTTCGTGAGCAGgtatccgatc ... aaaattgaagGCTGTATGGGCATTGGGCAATGTTGCTGGTGATTCCCCTAAGTGCCGTGAC
EST: gi|29662174|gb|CB658449.1|CB658449
EST:     CAATATTTGTGAAGCTTCTTGGTTCTTCTAGTGATGATGTTCGTGAGCAG                         GCTGTATGGGCATTGGGCAATGTTGCTGGTGATTCCCCTAAGTGCCGTGAC
genomic: CAATATTTGTGAAGCTTCTTGGTTCTTCTAGTGATGATGTTCGTGAGCAGgtatccgatc ... aaaattgaagGCTGTATGGGCATTGGGCAATGTTGCTGGTGATTCCCCTAAGTGCCGTGAC
EST: gi|29680121|gb|CB676396.1|CB676396
EST:     CAATATTTGTGAAGCTTCTTGGTTCTTCTAGTGATGATGTTCGTGAGCAG                         GCTGTATGGGCATTGGGCAATGTTGCTGGTGATTCCCCTAAGTGCCGTGAC
genomic: CAATATTTGTGAAGCTTCTTGGTTCTTCTAGTGATGATGTTCGTGAGCAGgtatccgatc ... aaaattgaagGCTGTATGGGCATTGGGCAATGTTGCTGGTGATTCCCCTAAGTGCCGTGAC
EST: gi|58588691|gb|CF986999.1|CF986999
EST:     CAATATTTGTGAAGCTTCTTGGTTCTTCTAGTGATGATGTTCGTGAGCAG                         GCTGTATGGGCATTGGGCAATGTTGCTGGTGATTCCCCTAAGTGCCGTGAC
genomic: CAATATTTGTGAAGCTTCTTGGTTCTTCTAGTGATGATGTTCGTGAGCAGgtatccgatc ... aaaattgaagGCTGTATGGGCATTGGGCAATGTTGCTGGTGATTCCCCTAAGTGCCGTGAC
EST: gi|29640361|gb|CB645370.1|CB645370
EST:     CAATATTTGTGAAGCTTCTTGGTTCTTCTAGTGATGATGTTCGTGAGCAG                         GCTGTATGGGCATTGGGCAATGTTGCTGGTGATTCCCCTAAGTGCCGTGAC
genomic: CAATATTTGTGAAGCTTCTTGGTTCTTCTAGTGATGATGTTCGTGAGCAGgtatccgatc ... aaaattgaagGCTGTATGGGCATTGGGCAATGTTGCTGGTGATTCCCCTAAGTGCCGTGAC
EST: gi|29643710|gb|CB648717.1|CB648717
EST:     CAATATTTGTGAAGCTTCTTGGTTCTTCTAGTGATGATGTTCGTGAGCAG                         GCTGTATGGGCATTGGGCAATGTTGCTGGTGATTCCCCTAAGTGCCGTGAC
genomic: CAATATTTGTGAAGCTTCTTGGTTCTTCTAGTGATGATGTTCGTGAGCAGgtatccgatc ... aaaattgaagGCTGTATGGGCATTGGGCAATGTTGCTGGTGATTCCCCTAAGTGCCGTGAC
EST: gi|58684235|gb|CK072922.1|CK072922
EST:     CAATATTTGTGAAGCTTCTTGGTTCTTCTAGTGATGATGTTCGTGAGCAG                         GCTGTATGGGCATTGGGCAATGTTGCTGGTGATTCCCCTAAGTG
genomic: CAATATTTGTGAAGCTTCTTGGTTCTTCTAGTGATGATGTTCGTGAGCAGgtatccgatc ... aaaattgaagGCTGTATGGGCATTGGGCAATGTTGCTGGTGATTCCCCTAAGTG
EST: gi|29629650|gb|CB634659.1|CB634659
EST:     CAATATTTGTGAAGCTTCTTGGTTCTTCTAGTGATGATGTTCGTGAGCAG                         GCTGTATGGGCATTGGGCAATGTTGCTGGTGATTCCCCTAAGTGCCGTGAC
genomic: CAATATTTGTGAAGCTTCTTGGTTCTTCTAGTGATGATGTTCGTGAGCAGgtatccgatc ... aaaattgaagGCTGTATGGGCATTGGGCAATGTTGCTGGTGATTCCCCTAAGTGCCGTGAC
EST: gi|33795122|gb|CF323434.1|CF323434
EST:     AATATTTGTGAAGCTTCTTGGTTCTTCTA-TGNATGATGTTCGTGAGCAG                         GCTGTATGGGCATTGGGCAATGTTTGCTGGTGATTCCCCTAAGTGCCGTGA
genomic: AATATTTGTGAAGCTTCTTGGTTCTTCTAGTG-ATGATGTTCGTGAGCAGgtatccgatc ... aaaattgaagGCTGTATGGGCATTGGGCAATGTT-GCTGGTGATTCCCCTAAGTGCCGTGA
EST: gi|29676485|gb|CB672760.1|CB672760
EST:     CAATATTTGTGAAGCTTCTTGGTTCTTCTAGTGATGATGTTCGTGAGCAG                         GCTGTATGGGCATTGGGCAATGTTGCTGGTGATTCCCCTAAGTGCCGTGAC
genomic: CAATATTTGTGAAGCTTCTTGGTTCTTCTAGTGATGATGTTCGTGAGCAGgtatccgatc ... aaaattgaagGCTGTATGGGCATTGGGCAATGTTGCTGGTGATTCCCCTAAGTGCCGTGAC
EST: gi|66912883|gb|CX099731.1|CX099731
EST:     CAATATTTGTGAAGCTTCTTGGTTCTTCTAGTGATGATGTTCGTGAGCAG                         GCTGTATGGGCATTGGGCAATGTTGCTGGTGATTCCCCTAAGTGCCGTGAC
genomic: CAATATTTGTGAAGCTTCTTGGTTCTTCTAGTGATGATGTTCGTGAGCAGgtatccgatc ... aaaattgaagGCTGTATGGGCATTGGGCAATGTTGCTGGTGATTCCCCTAAGTGCCGTGAC
EST: gi|29681891|gb|CB678166.1|CB678166
EST:     CAATATTTGTGAAGCTTCTTGGTTCTTCTAGTGATGATGTTCGTGAGCAG                         GCTGTATGGGCATTGGGCAATGTTGCTGGTGATTCCCCTAAGTGCCGTGAC
genomic: CAATATTTGTGAAGCTTCTTGGTTCTTCTAGTGATGATGTTCGTGAGCAGgtatccgatc ... aaaattgaagGCTGTATGGGCATTGGGCAATGTTGCTGGTGATTCCCCTAAGTGCCGTGAC
EST: gi|58675322|gb|CK064009.1|CK064009
EST:     CAATATTTGTGAAGCTTCTTGGTTCTTCTAGTGATGATGTTCGTGAGCAG                         GCTGTATGGGCATTGGGCAATGTTGCTGGTGATTCCCCTAAGTGCCGTGAC
genomic: CAATATTTGTGAAGCTTCTTGGTTCTTCTAGTGATGATGTTCGTGAGCAGgtatccgatc ... aaaattgaagGCTGTATGGGCATTGGGCAATGTTGCTGGTGATTCCCCTAAGTGCCGTGAC
EST: gi|58695850|gb|CK084537.1|CK084537
EST:     CAATATTTGTGAAGCTTCTTGGTTCTTCTAGTGATGATGTTCGTGAGCAG                         GCTGTATGGGCATTGGGCAATGTTGCTGGTGATTCCCCTAAGTGCCGTGAC
genomic: CAATATTTGTGAAGCTTCTTGGTTCTTCTAGTGATGATGTTCGTGAGCAGgtatccgatc ... aaaattgaagGCTGTATGGGCATTGGGCAATGTTGCTGGTGATTCCCCTAAGTGCCGTGAC
EST: gi|58680439|gb|CK069126.1|CK069126
EST:     CAATATTTGTGAAGCTTCTTGGTTCTTCTAGTGATGATGTTCGTGAGCAG                         GCTGTATGGGCATTGGGCAATGTTGCTGGTGATTCCCCTAAGTGCCGTGAC
genomic: CAATATTTGTGAAGCTTCTTGGTTCTTCTAGTGATGATGTTCGTGAGCAGgtatccgatc ... aaaattgaagGCTGTATGGGCATTGGGCAATGTTGCTGGTGATTCCCCTAAGTGCCGTGAC
EST: gi|58689500|gb|CK078187.1|CK078187
EST:     CAATATTTGTGAAGCTTCTTGGTTCTTCTAGTGATGATGTTCGTGAGCAG                         GCTGTATGGGCATTGGGCAATGTTGCTGGTGATTCCCCT
genomic: CAATATTTGTGAAGCTTCTTGGTTCTTCTAGTGATGATGTTCGTGAGCAGgtatccgatc ... aaaattgaagGCTGTATGGGCATTGGGCAATGTTGCTGGTGATTCCCCT
EST: gi|29677719|gb|CB673994.1|CB673994
EST:     CAATATTTGTGAAGCTTCTTGGTTCTTCTAGTGATGATGTTCGTGAGCAG                         GCTGTATGGGCATTGGGCAATGTTGCTGGTGATTCCCCTAAGTGCCGTGAC
genomic: CAATATTTGTGAAGCTTCTTGGTTCTTCTAGTGATGATGTTCGTGAGCAGgtatccgatc ... aaaattgaagGCTGTATGGGCATTGGGCAATGTTGCTGGTGATTCCCCTAAGTGCCGTGAC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 75 (upstream exon), 75 (downstream exon)
Score: 86

ATCTGGCACTTCGGAGAATACAAAGGTTGTCATTGATCATGGGGCTGTACCAATATTTGTGAAGCTTCTTGGTTCTTCTAGTGATGATGTTCGTGAGCAGgtatccgatc ... aaaattgaagGCTGTATGGGCATTGGGCAATGTTGCTGGTGATTCCCCTAAGTGCCGTGACCTTGTTCTTGCCAATGGTGCATTGCTGCCTCTGCTAGCACAGTTGAATG




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ATCTGGCACTTCGGAGAATACAAAGGTTGTCATTGATCATGGGGCTGTACCAATATTTGTGAAGCTTCTTGGTTCTTCTAGTGATGATGTTCGTGAGCAGgtatccgatcatctcctgacttgtctttgtgctttctgtacttccttgatattattttgattgagtgcattgttggagttattaatgtttttacctcttgaaaaaaaattgaag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG