1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
CTGTCGCTGGGCCAGCTCGTCCGTCTCTGGGAGAAGAAGTCCGGCAACACCCTCCAGAAACGCTACGTCTCCGACCTGCAGCTTGCCAACCAAGTCCAAGgtaaattatagttagctatagctagctgaagtgtactagtattttcgtcagctgctcgatcaatatgcaactaagcatatactccctccatttcaaaata...
species | Oryza sativa |
transcript | LOC_Os01g13610.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: CAGCTTGCCAACCAAGTCCAAG AGGCACCGTTCCCGGTGAACTTTCAGCTGGCGATGGTGCACTCGACGCTGGEST: gi|27576981|gb|CA999675.1|CA999675
genomic: CAGCTTGCCAACCAAGTCCAAGgtaaattata ... gcatatgcagAGGCACCGTTCCCGGTGAACTTTCAGCTGGCGATGGTGCACTCGACGCTGG
EST: CAGAAACGCTACGTCTCCGACCTGCAGCTTGCCAACCAAGTCCAAG AGGCACCGTTCCCGGTGAACTTTCAGCTGGCGATGGTGCACTCGACGCTGGEST: gi|88461189|gb|CI547369.1|CI547369
genomic: CAGAAACGCTACGTCTCCGACCTGCAGCTTGCCAACCAAGTCCAAGgtaaattata ... gcatatgcagAGGCACCGTTCCCGGTGAACTTTCAGCTGGCGATGGTGCACTCGACGCTGG
EST: CCTCCAGAAACGCTACGTCTCCGACCTGCAGCTTGCCAACCAAGTCCAAG AGGCACCGTTCCCGGTGAACTTTCAGCTGGCGATGGTGCACTCGACGCTGGEST: gi|88506637|gb|CI434143.1|CI434143
genomic: CCTCCAGAAACGCTACGTCTCCGACCTGCAGCTTGCCAACCAAGTCCAAGgtaaattata ... gcatatgcagAGGCACCGTTCCCGGTGAACTTTCAGCTGGCGATGGTGCACTCGACGCTGG
EST: CCAGAAACGCTACGTCTCCGACCTGCAGCTTGCCAACCAAGTCCAAG AGGCACCGTTCCCGGTGAACTTTCAGCTGGCGATGGTGCACTCGACGCTGGEST: gi|88205827|gb|CI205676.1|CI205676
genomic: CCAGAAACGCTACGTCTCCGACCTGCAGCTTGCCAACCAAGTCCAAGgtaaattata ... gcatatgcagAGGCACCGTTCCCGGTGAACTTTCAGCTGGCGATGGTGCACTCGACGCTGG
EST: CCTCCAGAAACGTTACGTCTCCGACCTGCAGCTTGCCAACCAAGTCCAAG AGGCACCGTTCCCGGTGAACTTTCAGCTGGCGATGGTGCACTCGACGCTGGEST: gi|88438808|gb|CI546290.1|CI546290
genomic: CCTCCAGAAACGCTACGTCTCCGACCTGCAGCTTGCCAACCAAGTCCAAGgtaaattata ... gcatatgcagAGGCACCGTTCCCGGTGAACTTTCAGCTGGCGATGGTGCACTCGACGCTGG
EST: CCTCCAGAAACGCTACGTCTCCGACCTGCAGCTTGCCAACCAAGTCCAAG AGGCACCGTTCCCGGTGAACTTTCAGCTGGCGATGGTGCACTCGACGCTGG
genomic: CCTCCAGAAACGCTACGTCTCCGACCTGCAGCTTGCCAACCAAGTCCAAGgtaaattata ... gcatatgcagAGGCACCGTTCCCGGTGAACTTTCAGCTGGCGATGGTGCACTCGACGCTGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTGTCGCTGGGCCAGCTCGTCCGTCTCTGGGAGAAGAAGTCCGGCAACACCCTCCAGAAACGCTACGTCTCCGACCTGCAGCTTGCCAACCAAGTCCAAGgtaaattatagttagctatagctagctgaagtgtactagtattttcgtcagctgctcgatcaatatgcaactaagcatatactccctccatttcaaaata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctccctc