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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCGTGCTCACCGCCGGCGCCACCGCCGCCAACGAGCTCCTCACCTTCATCCTCGCCAACCCCGGCGACGCCCTGCTCATCCCTACCCCTTACTACCCCGGgtaagccactgttccattgccattgccattgccatgcatctagctagcttgggatcgatcgagcagagtggcaggctgagctgacatccatggcgtgcag

Basic information

species Oryza sativa
transcript LOC_Os01g09700.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g09700.1 (Oryza sativa), 5'ss of exon 4
lower sequence: GRMZM2G163015_T01 (Zea mays), 5'ss of exon 2
TCGTGCTCACCGCCGGCGCCACCGCCGCCAACGAGCTCCTCACCTTCATCCTCGCCAACCCCGGCGACGCCCTGCTCATCCCTACCCCTTACTACCCCGGgtaagc----cact----------------gttccat---tgcc---attgccattgccatgcatctagc-tagcttgggatcgatcga-gcagagtggcaggctgagctgacatccatggcgtgcag
|||||||||||||||||||||| || || |||||||| ||||| ||| |||| |||||||| || ||||| ||||| |||||||| |||||||| || ||||||||    | ||                | | |||   |||    |   ||   || ||||  ||     | |     |  | || |  ||||  | ||| |  | ||||||| |   || |||||
TCGTGCTCACCGCCGGCGCCACGGCAGCTAACGAGCTGCTCACGTTCGTCCTGGCCAACCCGGGAGACGCGCTGCTGATCCCTACTCCTTACTATCCTGGgtaagcggagcgctaagaagcatccagcatgctgcatgcatgcacggacccccggcgctatgctactgttacaccgcaacagtgctctacacagacagacagac-aaactgacatgctctgcttgcag