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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGGTCCTTTCAATCCCGGCAAAGGTGACAAAGCGAAACTGAAAGTGAAAGTCCGCCTTAACATCCATGGGGTGGTCACAGTTGAATCAGCAACAgtgagtgataatgcaggctgttttttttttgtagttcttttcctaaatgattttcgttgaaataaatctgagagtatttctattggtctggtgcag

Basic information

species Oryza sativa
transcript LOC_Os01g08560.2
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29636673|gb|CB641682.1|CB641682
EST:     TGAAAGTCCGCCTTAACATCCATGGGGTGGTCACAGTTGAATCAGCAACA                         ATGTTGGAGGAGGAGGAAGTGGAAGTTCCAGTAGCAGCTACAACTGAGCCT
genomic: TGAAAGTCCGCCTTAACATCCATGGGGTGGTCACAGTTGAATCAGCAACAgtgagtgata ... tctggtgcagATGTTGGAGGAGGAGGAAGTGGAAGTTCCAGTAGCAGCTACAACTGAGCCT
EST: gi|29619080|gb|CB624092.1|CB624092
EST:     TGAAAGTCCGCCTTAACATCCATGGGGTGGTCACAGTTGAATCAGCAACA                         ATGTTGGAGGAGGAGGAAGTGGAAGTTCCAGTAGCAGCTACAACTGAGCCT
genomic: TGAAAGTCCGCCTTAACATCCATGGGGTGGTCACAGTTGAATCAGCAACAgtgagtgata ... tctggtgcagATGTTGGAGGAGGAGGAAGTGGAAGTTCCAGTAGCAGCTACAACTGAGCCT
EST: gi|58611243|gb|CK038955.1|CK038955
EST:     TGAAAGTCCGCCTTAACATCCATGGGGTGGTCACAGTTAAATCAGCAACA                         ATGTTGGAGGAGGAGGAAGTGGAAGTTCCAGTAGCAGCTACAACTGAGCCT
genomic: TGAAAGTCCGCCTTAACATCCATGGGGTGGTCACAGTTGAATCAGCAACAgtgagtgata ... tctggtgcagATGTTGGAGGAGGAGGAAGTGGAAGTTCCAGTAGCAGCTACAACTGAGCCT
EST: gi|58695736|gb|CK084423.1|CK084423
EST:     TGAAAGTCCGCCTTAACATCCATGGGGTGGTCACAGTTGAATCAGCAACA                         ATGTTGGAGGAGGAGGAAGTGGAAGTTCCAGTAGCAGCTACAACTGAGCCT
genomic: TGAAAGTCCGCCTTAACATCCATGGGGTGGTCACAGTTGAATCAGCAACAgtgagtgata ... tctggtgcagATGTTGGAGGAGGAGGAAGTGGAAGTTCCAGTAGCAGCTACAACTGAGCCT