Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATGTTTGTGGAAACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAGgtacatgtttgcttagttgttttaaattcacctgcctacgcaagagctgtttttactctcttttgtacctgcgtcctcagccgtcttgttctaatcggtttgttctctcccttgcag

Basic information

species Oryza sativa
transcript LOC_Os01g08320.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g08320.1 (Oryza sativa), 5'ss of exon 4
lower sequence: GRMZM2G004696_T01 (Zea mays), 5'ss of exon 4
GATGTTTGTGGAAACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAGgtacatgtttgcttagttgttttaaattcacctgcctacgcaagagctgtttttactctcttttgtacctg-cgtcctcagccgtcttgttctaatcggtttgttctctcccttgcag
|||||| |||||||| ||||||||||||||||| |||||| | |||||||| || ||||| ||||| |   || ||  |    | ||    |||| | |  |    |      | | || | |||   | |   ||  ||    | | ||                              
GATGTTCGTGGAAACCTGCCAGCGCCTTCGTCTGATGAAAGGTTCAGAGGCCGTGAACTTGGgtacgtacatgtttt-tcccctaaagcctacctccatgtgtttaaaa-acgtctgctttttttcacagccatcgctcttgttcattttcacag-------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86434313|gb|CI094656.1|CI094656
EST:     AACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAG                         CACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTG
genomic: AACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAGgtacatgttt ... tcccttgcagCACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTG
EST: gi|87026433|gb|CI252387.1|CI252387
EST:     AACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAG                         CACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTG
genomic: AACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAGgtacatgttt ... tcccttgcagCACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTG
EST: gi|88221142|gb|CI221098.1|CI221098
EST:     AACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAG                         CACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTG
genomic: AACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAGgtacatgttt ... tcccttgcagCACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTG
EST: gi|88215704|gb|CI215553.1|CI215553
EST:     AACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAG                         CACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTG
genomic: AACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAGgtacatgttt ... tcccttgcagCACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTG
EST: gi|86526065|gb|CI166271.1|CI166271
EST:     AACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAG                         CACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTG
genomic: AACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAGgtacatgttt ... tcccttgcagCACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTG
EST: gi|88242594|gb|CI242443.1|CI242443
EST:     AACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAG                         CACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTG
genomic: AACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAGgtacatgttt ... tcccttgcagCACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTG
EST: gi|94362956|gb|CI053117.1|CI053117
EST:     AACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAG                         CACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTG
genomic: AACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAGgtacatgttt ... tcccttgcagCACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTG
EST: gi|86542731|gb|CI182937.1|CI182937
EST:     AACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAG                         CACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTG
genomic: AACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAGgtacatgttt ... tcccttgcagCACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTG
EST: gi|86529312|gb|CI169518.1|CI169518
EST:     AACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAG                         CACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTG
genomic: AACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAGgtacatgttt ... tcccttgcagCACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTG
EST: gi|86417085|gb|CI031294.1|CI031294
EST:     AACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAG                         CACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTG
genomic: AACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAGgtacatgttt ... tcccttgcagCACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTG
EST: gi|86417843|gb|CI032052.1|CI032052
EST:     AACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAG                         CACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTG
genomic: AACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAGgtacatgttt ... tcccttgcagCACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTG
EST: gi|22307664|gb|BQ908886.1|BQ908886
EST:     AACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAG                         CACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTG
genomic: AACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAGgtacatgttt ... tcccttgcagCACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTG
EST: gi|88476493|gb|CI413764.1|CI413764
EST:     AACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAG                         CACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTG
genomic: AACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAGgtacatgttt ... tcccttgcagCACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTG
EST: gi|86594182|gb|CI262410.1|CI262410
EST:     AACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAG                         CACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTG
genomic: AACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAGgtacatgttt ... tcccttgcagCACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTG
EST: gi|86542617|gb|CI182823.1|CI182823
EST:     AACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAG                         CACCAAGAGGCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTG
genomic: AACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAGgtacatgttt ... tcccttgcagCACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTG
EST: gi|88847243|gb|CI011186.1|CI011186
EST:     AACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAG                         CACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTG
genomic: AACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAGgtacatgttt ... tcccttgcagCACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTG
EST: gi|87031528|gb|CI263901.1|CI263901
EST:     AACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAG                         CACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTG
genomic: AACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAGgtacatgttt ... tcccttgcagCACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTG
EST: gi|87031440|gb|CI261814.1|CI261814
EST:     AACCTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAG                         CACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTG
genomic: AACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAGgtacatgttt ... tcccttgcagCACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTG
EST: gi|88202671|gb|CI201026.1|CI201026
EST:     AACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAG                         CACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTG
genomic: AACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAGgtacatgttt ... tcccttgcagCACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTG
EST: gi|88955604|gb|CI091893.1|CI091893
EST:     AACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAG                         CACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTG
genomic: AACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAGgtacatgttt ... tcccttgcagCACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTG
EST: gi|88207580|gb|CI207429.1|CI207429
EST:     AACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAG                         CACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTG
genomic: AACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAGgtacatgttt ... tcccttgcagCACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTG
EST: gi|88850081|gb|CI091376.1|CI091376
EST:     AACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAG                         CACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTG
genomic: AACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAGgtacatgttt ... tcccttgcagCACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTG
EST: gi|86531401|gb|CI171607.1|CI171607
EST:     AACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAG                         CACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTG
genomic: AACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAGgtacatgttt ... tcccttgcagCACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTG
EST: gi|88849381|gb|CI089289.1|CI089289
EST:     AACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAG                         CACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTG
genomic: AACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAGgtacatgttt ... tcccttgcagCACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTG
EST: gi|86525599|gb|CI165805.1|CI165805
EST:     AACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAG                         CACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTG
genomic: AACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAGgtacatgttt ... tcccttgcagCACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTG
EST: gi|8251151|gb|AU091289.1|AU091289
EST:     AACTTGCCAGCG-CTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAG                         CACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTG
genomic: AACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAGgtacatgttt ... tcccttgcagCACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTG
EST: gi|86512640|gb|CI155273.1|CI155273
EST:     AACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAG                         CACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTG
genomic: AACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAGgtacatgttt ... tcccttgcagCACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTG
EST: gi|15849694|gb|BI797970.1|BI797970
EST:     AACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAG                         CACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGCTT
genomic: AACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAGgtacatgttt ... tcccttgcagCACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGG-TT
EST: gi|89170448|gb|CI039725.1|CI039725
EST:     AACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAG                         CACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTG
genomic: AACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAGgtacatgttt ... tcccttgcagCACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTG
EST: gi|88438874|gb|CI546356.1|CI546356
EST:     TGAAAAGCTCAGAGGCTGTCAACTTAG                         CACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTG
genomic: TGAAAAGCTCAGAGGCTGTCAACTTAGgtacatgttt ... tcccttgcagCACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTG
EST: gi|88845667|gb|CI008664.1|CI008664
EST:     AACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAG                         CACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTG
genomic: AACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAGgtacatgttt ... tcccttgcagCACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTG
EST: gi|88205398|gb|CI204784.1|CI204784
EST:     AACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAG                         CACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTG
genomic: AACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAGgtacatgttt ... tcccttgcagCACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTG
EST: gi|88242921|gb|CI240772.1|CI240772
EST:     AACTTGCCTGCGCCTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAG                         CACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTG
genomic: AACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAGgtacatgttt ... tcccttgcagCACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTG
EST: gi|86526139|gb|CI166345.1|CI166345
EST:     AACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAG                         CACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTG
genomic: AACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAGgtacatgttt ... tcccttgcagCACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTG
EST: gi|88966146|gb|CI013022.1|CI013022
EST:     AACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAG                         CACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTG
genomic: AACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAGgtacatgttt ... tcccttgcagCACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTG
EST: gi|88257775|gb|CI360361.1|CI360361
EST:     AACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAG                         CACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTG
genomic: AACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAGgtacatgttt ... tcccttgcagCACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTG
EST: gi|86424642|gb|CI063403.1|CI063403
EST:     AACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAG                         CACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTG
genomic: AACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAGgtacatgttt ... tcccttgcagCACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTG
EST: gi|88237189|gb|CI237038.1|CI237038
EST:     AACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAG                         CACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTG
genomic: AACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAGgtacatgttt ... tcccttgcagCACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTG
EST: gi|86593437|gb|CI264316.1|CI264316
EST:     AACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAG                         CACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTG
genomic: AACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAGgtacatgttt ... tcccttgcagCACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTG
EST: gi|87033857|gb|CI188481.1|CI188481
EST:     AACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAG                         CACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTG
genomic: AACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAGgtacatgttt ... tcccttgcagCACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTG
EST: gi|87014717|gb|CI269424.1|CI269424
EST:     AACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAG                         CACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTG
genomic: AACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAGgtacatgttt ... tcccttgcagCACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTG
EST: gi|88244233|gb|CI243355.1|CI243355
EST:     AACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAG                         CACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTG
genomic: AACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAGgtacatgttt ... tcccttgcagCACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTG
EST: gi|86252743|gb|CI010225.1|CI010225
EST:     AACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAG                         CACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTG
genomic: AACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAGgtacatgttt ... tcccttgcagCACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTG
EST: gi|86493004|gb|CI135637.1|CI135637
EST:     AACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAG                         CACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTG
genomic: AACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAGgtacatgttt ... tcccttgcagCACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTG
EST: gi|88965378|gb|CI011629.1|CI011629
EST:     AACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAG                         CACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTG
genomic: AACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAGgtacatgttt ... tcccttgcagCACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTG
EST: gi|15008690|gb|AU223078.1|AU223078
EST:     AACTTGCCAGCGCCTTNGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAG                         CACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTG
genomic: AACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAGgtacatgttt ... tcccttgcagCACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTG
EST: gi|86522134|gb|CI162340.1|CI162340
EST:     AACTTGCCAGCGCCTTCGTCCCATGAAAAGCTCAGAGGCTGTCAACTTAG                         CACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTG
genomic: AACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAGgtacatgttt ... tcccttgcagCACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTG
EST: gi|87013760|gb|CI269259.1|CI269259
EST:     AACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAG                         CACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTG
genomic: AACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAGgtacatgttt ... tcccttgcagCACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTG
EST: gi|88431809|gb|CI557466.1|CI557466
EST:     CAGAGGCTGTCAACTTAG                         CACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTG
genomic: CAGAGGCTGTCAACTTAGgtacatgttt ... tcccttgcagCACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTG
EST: gi|87014558|gb|CI284070.1|CI284070
EST:     AACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAG                         CACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTG
genomic: AACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAGgtacatgttt ... tcccttgcagCACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTG
EST: gi|87032648|gb|CI266288.1|CI266288
EST:     AACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAG                         CACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTG
genomic: AACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAGgtacatgttt ... tcccttgcagCACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTG
EST: gi|29685212|gb|CB681487.1|CB681487
EST:     AACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAG                         CACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTG
genomic: AACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAGgtacatgttt ... tcccttgcagCACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTG
EST: gi|87032450|gb|CI264231.1|CI264231
EST:     AACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAG                         CACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTG
genomic: AACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAGgtacatgttt ... tcccttgcagCACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTG
EST: gi|86527896|gb|CI168102.1|CI168102
EST:     AACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAG                         CACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTG
genomic: AACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAGgtacatgttt ... tcccttgcagCACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTG
EST: gi|88450816|gb|CI549902.1|CI549902
EST:     CTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAG                         CACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTG
genomic: CTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAGgtacatgttt ... tcccttgcagCACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTG
EST: gi|86526790|gb|CI166996.1|CI166996
EST:     AACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAG                         CACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTG
genomic: AACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAGgtacatgttt ... tcccttgcagCACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTG
EST: gi|89176809|gb|CI013382.1|CI013382
EST:     AACTTGCCAGCGCCTTCGTCTCATGAAAAGTTCAGAGGCTGTCAACTTAG                         CACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTG
genomic: AACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAGgtacatgttt ... tcccttgcagCACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTG
EST: gi|87013252|gb|CI265350.1|CI265350
EST:     AACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAG                         CACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTG
genomic: AACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAGgtacatgttt ... tcccttgcagCACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTG
EST: gi|88975839|gb|CI024090.1|CI024090
EST:     AACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAG                         CACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTG
genomic: AACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAGgtacatgttt ... tcccttgcagCACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTG
EST: gi|88830384|gb|CI010584.1|CI010584
EST:     TCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAG                         CACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTG
genomic: TCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAGgtacatgttt ... tcccttgcagCACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTG
EST: gi|86823312|gb|CI256318.1|CI256318
EST:     AACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAG                         CACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTG
genomic: AACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAGgtacatgttt ... tcccttgcagCACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTG
EST: gi|86824408|gb|CI262940.1|CI262940
EST:     AACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAG                         CACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTG
genomic: AACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAGgtacatgttt ... tcccttgcagCACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTG
EST: gi|88242343|gb|CI242192.1|CI242192
EST:     AACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAG                         CACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTG
genomic: AACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAGgtacatgttt ... tcccttgcagCACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTG
EST: gi|88205307|gb|CI204693.1|CI204693
EST:     AACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAG                         CACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTG
genomic: AACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAGgtacatgttt ... tcccttgcagCACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTG
EST: gi|86512596|gb|CI155229.1|CI155229
EST:     AACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAG                         CACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTG
genomic: AACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAGgtacatgttt ... tcccttgcagCACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTG
EST: gi|86542494|gb|CI182700.1|CI182700
EST:     AACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAG                         CACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTG
genomic: AACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAGgtacatgttt ... tcccttgcagCACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTG
EST: gi|88836932|gb|CI008368.1|CI008368
EST:     AACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAG                         CACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTG
genomic: AACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAGgtacatgttt ... tcccttgcagCACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTG
EST: gi|88517949|gb|CI445603.1|CI445603
EST:     AACTTGCCAGCCCCTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAG                         CACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTG
genomic: AACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAGgtacatgttt ... tcccttgcagCACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTG
EST: gi|89170540|gb|CI039817.1|CI039817
EST:     CTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAG                         CACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTG
genomic: CTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAGgtacatgttt ... tcccttgcagCACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTG
EST: gi|86507819|gb|CI150452.1|CI150452
EST:     AACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAG                         CACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTG
genomic: AACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAGgtacatgttt ... tcccttgcagCACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTG
EST: gi|87020583|gb|CI263446.1|CI263446
EST:     AACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAG                         CACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTG
genomic: AACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAGgtacatgttt ... tcccttgcagCACCAAGAGCCGCTCAATGAGGCATTCCCGGTGCCCATGACCGTGTGGTTG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GATGTTTGTGGAAACTTGCCAGCGCCTTCGTCTCATGAAAAGCTCAGAGGCTGTCAACTTAGgtacatgtttgcttagttgttttaaattcacctgcctacgcaagagctgtttttactctcttttgtacctgcgtcctcagccgtcttgttctaatcggtttgttctctcccttgcag

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