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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCGAGGGTGGCGACGGCGGCGGAGTTCAGCCTCTCTCAGATCTGGGTCATCTCCGGCTCCTTCGGCAATGACCTCAACACCATCGAAGCCGGATGGCAGgtaatctagtctaatctaatctaatctctcatgcattaatctgccctatatcaatataatcatatgtacactcatgcatgttgcatgcatgcaagaactc...

Basic information

species Oryza sativa
transcript LOC_Os01g07570.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g07570.1 (Oryza sativa), 5'ss of exon 4
lower sequence: GRMZM2G162928_T03 (Zea mays), 5'ss of exon 3
GGCGAGGGTGGCGACGGCGGCGGAGTTCAGCCTCTCTCAGATCTGGGTCATCTCCGGCTCCTTCGGCAATGACCTCAACACCATCGAAGCCGGATGGCAGgtaatctagtctaatctaatctaatctctcatgcattaatctgccctatatcaatataatcatatgtacactcatgcatgtt-gcatgcatgcaagaactc---
||| | ||||||| ||||||||||||||||||| || |||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||    ||   ||   ||  |     |          || | |||||   | | |     | || ||||   ||||  |  | ||   ||   ||  |  |   
GGCCAAGGTGGCGTCGGCGGCGGAGTTCAGCCTGTCCCAGATCTGGGTCATCTCCGGCTCCTTCGGCAACGACCTCAACACCATCGAGGCCGGATGGCAGgtg-cgtacgttacgtta--cgtgcttgctgcaatcaaaaccgccctgc-ttattgctgccgtacgtacgtgcatgtgtactcgccctcacttaaacaacctcc

upper sequence: LOC_Os01g07570.1 (Oryza sativa), 5'ss of exon 4
lower sequence: GRMZM2G150962_T02 (Zea mays), 5'ss of exon 4
GGCGAGGGTGGCGACGGCGGCGGAGTTCAGCCTCTCTCAGATCTGGGTCATCTCCGGCTCCTTCGGCAATGACCTCAACACCATCGAAGCCGGATGGCAGgtaatctagtc-taatctaatctaatctctcatgcattaatctgccc-tata---tcaatataatcat-atgtacactcatgcatgttgcatgcatgcaagaactc
 || | ||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||| |||| |||||||||||||||| | |  |  || |     |  |  | |  ||  || | ||  | |||    ||| |  | |||| ||||||     |  | ||  | |   |   |      
CGCCAAGGTGGCGTCGGCGGCGGAGTTCAGCCTCTCCCAGATCTGGGTCATCTCCGGCTCCTTCGGCAACGACCTCAACACCGTCGAGGCCGGATGGCAGgtaaccaaaccgcaaccgccatttctgccgcgcgccgtagtatgtgcatatgcattcatttcattcatcatgtacttaactcaacgtcacttttttttta------

upper sequence: LOC_Os01g07570.1 (Oryza sativa), 5'ss of exon 4
lower sequence: AT1G10750.1 (Arabidopsis thaliana), 5'ss of exon 4
--GGCGAGGGTGGCGACGGCGGCGGAGTTCAGCCTCTCTCAGATCTGGGTCATCTCCGGCTCCTTCGGCAATGACCTCAACACCATCGAAGCCGGATGGCAGgtaatctagtctaatctaatctaatctctcatgcatta-atctgccctatatcaatataatcatatgtac---actcatgcatgttgcatgcatgcaagaactc--
    | ||    |   |       || || ||  | |||||||| ||| | ||||| || ||||| |||||||| ||||||||||| ||||| || ||||||||||   | | |  |  |      | | |||   |||| |||    | ||| |  || ||  |||  | |    ||  |   ||||| ||   |    |   |   
TCCACAAGTTCAGAACCAATA--CGAATTTAGTTTATCTCAGATTTGGATTATCTCTGGTTCCTTTGGCAATGATCTCAACACCATTGAAGCTGGTTGGCAGgtaa--caattttcttcatatatttatttcaaagattatatcacatcaatagct-taaaactatagatgcttagcttctaactgttg-ataattatttgccattag

upper sequence: LOC_Os01g07570.1 (Oryza sativa), 5'ss of exon 4
lower sequence: Vv01s0127g00010.t01 (Vitis vinifera), 5'ss of exon 4
GGCGAGGGTGGCGACGGCGGCGGAGTTCAGCCTCTCTCAGATCTGGGTCATCTCCGGCTCCTTCGGCAATGACCTCAACACCATCGAAGCCGGATGGCAGgtaatctagt-ctaatctaat-ctaatctctcatgcattaatctgccctatatcaatataat-catatgtacactcatgcatgttgcatgcatgcaagaactc
  |  ||||||| |        || |||||| | || || || |||||||||||||| || |||||  |||| ||||||||||| ||||| || ||||||| |   |  | ||  ||| ||  | || | ||    |  ||      ||   || |  || | ||  | |  |||    | ||  | || ||||  | | |  
ACCCCGGGTGGCTAATCAATATGAATTCAGCTTATCACAAATGTGGGTCATCTCCGGTTCATTCGGTGATGATCTCAACACCATTGAAGCTGGCTGGCAGgcatgttcttgctcttctgatattgatttttctcctagaaaggaaagcttactcgagttatttcaattttgaacttgaac-tggagaatacatgagaaacc--

upper sequence: LOC_Os01g07570.1 (Oryza sativa), 5'ss of exon 4
lower sequence: EFJ24376 (Selaginella moellendorffii), 5'ss of exon 4
GGCGAGGGTGGCGACGGCGGCGGAGTTCAGCCTCTCTCAGATCTGGGTCATCTCCGGCTCCTTCGGCAATGACCTCAACACCATCGAAGCCGGATGGCAGgtaatctagtctaatctaatctaatctctcatgcat-taatctgccctatatcaatataatcatatgtacactcatgcatgttgcatgcatgcaagaactc
  ||    | |    | |    ||||| |||||||| ||||||||| |  |    ||||||||||   | || ||||||| ||||||||| |||||||||||||||| |     || ||| |  |       ||   | |||||    | |                                                  
CCCGGACATCGATGTGCCCAACGAGTTTAGCCTCTCGCAGATCTGGCTGCTGGGAGGCTCCTTCGCGGACGATCTCAACAGCATCGAAGCTGGATGGCAGgtaatctggctaggtcgaatttccttgtgatcgcggatgatctgtttgacag-------------------------------------------------

upper sequence: LOC_Os01g07570.1 (Oryza sativa), 5'ss of exon 4
lower sequence: EFJ35641 (Selaginella moellendorffii), 5'ss of exon 4
GGCGAGGGTGGCGACGGCGGCGGAGTTCAGCCTCTCTCAGATCTGGGTCATCTCCGGCTCCTTCGGCAATGACCTCAACACCATCGAAGCCGGATGGCAGgtaatctagtctaatctaatctaatctctcat-gcat-taatctgccctatatcaatataatcatatgtacactcatgcatgttgcatgcatgcaagaactc
  ||    | |    | |    ||||| |||||||| ||||||||| |  |    ||||||||||   | || ||||||| ||||||||| |||||||||||||||| |||||     |  |   || | || ||   | |||||    | |                                                  
CCCGGACATCGATGTGCCCAACGAGTTTAGCCTCTCGCAGATCTGGCTGCTGGGAGGCTCCTTCGCGGACGATCTCAACAGCATCGAAGCTGGATGGCAGgtaatct-gtctaggtcgaatttccctgtgatcgcggatgatctgtttgacag-------------------------------------------------