Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGCTGAGATGCTTGTCAACCTTAGTATTCCCTGGGTTATTCTTGGACACTCTGAAAGGAGGAGTTTGTTGGGTGAATCAAATGAGgtatgatctagtttacattctatgaaatgtgcagatatgaattttgtatagttttagctggaaatagtgcaacaagccaaacctggggataacggtcact...

Basic information

species Oryza sativa
transcript LOC_Os01g05490.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g05490.2 (Oryza sativa), 5'ss of exon 4
lower sequence: GRMZM2G018177_T02 (Zea mays), 5'ss of exon 4
CGCTGAGATGCTTGTCAACCTTAGTATTCCCTGGGTTATTCTTGGACACTCTGAAAGGAGGAGTTTGTTGGGTGAATCAAATGAGgtatgatctagtttacattctatgaaatgtgcagatatgaattttgtatagttttagctggaaatagtgcaacaagccaaacctggggata-acggtcact---
 ||||||||||| ||||||||| |  |||||||||| |||||||||||||||||||||||   | || |||| |||||||||||||||||||| |  | |||   |||| ||  ||      |   | || | |   ||  ||| | ||| |||     |     | |||||  ||    ||  ||   
TGCTGAGATGCTCGTCAACCTTGGCGTTCCCTGGGTCATTCTTGGACACTCTGAAAGGAGAGCTCTGCTGGGAGAATCAAATGAGgtatgatccatgtcacaacttatgcaacatgt---cttttgtgttattttcattgcgcttgtaat-gtgtgcatatttttatctgggactatgttgtatctact

upper sequence: LOC_Os01g05490.2 (Oryza sativa), 5'ss of exon 4
lower sequence: GRMZM2G030784_T01 (Zea mays), 5'ss of exon 4
CGCTGAGATGCTTGTCAACCTTAGTATTCCCTGGGTTATTCTTGGACACTCTGAAAGGAGGAGTTTGTTGGGTGAATCAAATGAGgtatgatctagtttacattctatgaaatgtgcagatatgaattttgtatagttttagctggaa--atagtgca-acaagccaaacctggggataacggtcact-----
 ||||||||||| ||||||||| || |||||||||| |||||||||||||||||||||||   | || |||| ||||||||||| |||||||| ||    |||  |||| ||  ||          ||| || |  ||||   ||      || ||||  || |       | ||||  | | |  ||     
TGCTGAGATGCTCGTCAACCTTGGTGTTCCCTGGGTCATTCTTGGACACTCTGAAAGGAGAGCTCTGCTGGGAGAATCAAATGAAgtatgatccaggccgcatcttatgcaacatgtt--------tttcgtgtcattttcattgtggttgtaatgcatgcatgttttcatttgggactatgtttcctttgtg
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|9884572|gb|BE607405.1|BE607405
EST:     TTATTCTTGGACACTCTGAAAGGAGGAGTTTGTTGGGTGAATCAAATGAG                         TTTGTTGGAGACAAAGTGGCATATGCGCTCTCTCAGGGCTTGAAGGTCATT
genomic: TTATTCTTGGACACTCTGAAAGGAGGAGTTTGTTGGGTGAATCAAATGAGgtatgatcta ... tgaattgcagTTTGTTGGAGACAAAGTGGCATATGCGCTCTCTCAGGGCTTGAAGGTCATT
EST: gi|88428457|gb|CI564925.1|CI564925
EST:     TTATTCTTGGACACTCTGAAAGGAGGAGTTTGTTGGGTGAATCAAATGAG                         TTTGTTGGAGACAAAGTGGCATATGCGCTCTCTCAGGGCTTGAAGGTCATT
genomic: TTATTCTTGGACACTCTGAAAGGAGGAGTTTGTTGGGTGAATCAAATGAGgtatgatcta ... tgaattgcagTTTGTTGGAGACAAAGTGGCATATGCGCTCTCTCAGGGCTTGAAGGTCATT
EST: gi|88329671|gb|CI650137.1|CI650137
EST:     TTATTCTTGGACACTCTGAAAGGAGGAGTTTGTTGGGTGAATCAAATGAG                         TTTGTTGGAGACAAAGTGGCATATGCGCTCTCTCAGGG
genomic: TTATTCTTGGACACTCTGAAAGGAGGAGTTTGTTGGGTGAATCAAATGAGgtatgatcta ... tgaattgcagTTTGTTGGAGACAAAGTGGCATATGCGCTCTCTCAGGG
EST: gi|33809280|gb|CF330521.1|CF330521
EST:     TTATTCTTGGACACTCTGAAAGGAGGAGTTTGTTGGGTGAATCAAATGAG                         TTTGTTGGAGACAAAGTGGCATATGCGCTCTCTCAGGGCTTGAAGGTCATT
genomic: TTATTCTTGGACACTCTGAAAGGAGGAGTTTGTTGGGTGAATCAAATGAGgtatgatcta ... tgaattgcagTTTGTTGGAGACAAAGTGGCATATGCGCTCTCTCAGGGCTTGAAGGTCATT
EST: gi|163920975|gb|EG710112.1|EG710112
EST:     TTATTCTTGGACACTCTGAAAGGAGGAGTTTGTTGGGTGAATCAAATGAG                         TTTGTTGGAGACAAAGTGGCATATGCGCTCTCTCAGGGCTTGAAGGTCATT
genomic: TTATTCTTGGACACTCTGAAAGGAGGAGTTTGTTGGGTGAATCAAATGAGgtatgatcta ... tgaattgcagTTTGTTGGAGACAAAGTGGCATATGCGCTCTCTCAGGGCTTGAAGGTCATT
EST: gi|33807203|gb|CF329482.1|CF329482
EST:     TTATTCTTGGACACTCTGAAAGGAGGAGTTTGTTGGGTGAATCAAATGAG                         TTTGTTGGAGACAAAGTGGCATATGCGCTCTCTCAGGGCTTGAAGGTCATT
genomic: TTATTCTTGGACACTCTGAAAGGAGGAGTTTGTTGGGTGAATCAAATGAGgtatgatcta ... tgaattgcagTTTGTTGGAGACAAAGTGGCATATGCGCTCTCTCAGGGCTTGAAGGTCATT
EST: gi|396941501|gb|HO188710.1|HO188710
EST:     TTATTCTTGGACACTCTGAAAGGAGGAGTTTGTTGGGTGAATCAAATGAG                         TTTGTTGGAGACAAAGTGGCATATGCGCTCTCTCAGGGCTTGAAGGTCATT
genomic: TTATTCTTGGACACTCTGAAAGGAGGAGTTTGTTGGGTGAATCAAATGAGgtatgatcta ... tgaattgcagTTTGTTGGAGACAAAGTGGCATATGCGCTCTCTCAGGGCTTGAAGGTCATT
EST: gi|55432246|gb|CV729143.1|CV729143
EST:     TTATTCTTGGACACTCTGAAAGGAGGAGCTTGTTGGGTGAATCAAATGAG                         TTTGTTGGAGACAAAGTGGCATATGCGCTCTCTCAGGGCTTGAAGGTCATT
genomic: TTATTCTTGGACACTCTGAAAGGAGGAGTTTGTTGGGTGAATCAAATGAGgtatgatcta ... tgaattgcagTTTGTTGGAGACAAAGTGGCATATGCGCTCTCTCAGGGCTTGAAGGTCATT
EST: gi|14981165|gb|BI305843.1|BI305843
EST:     TTATTCTTGGACACTCTGAAAGGAGGAGCTTGTTGGGTGAATCAAATGAG                         TTTGTTGGAGACAAAGTGGCATATGCGCTCTCTCAGGGCTTGAAGGTCATT
genomic: TTATTCTTGGACACTCTGAAAGGAGGAGTTTGTTGGGTGAATCAAATGAGgtatgatcta ... tgaattgcagTTTGTTGGAGACAAAGTGGCATATGCGCTCTCTCAGGGCTTGAAGGTCATT
EST: gi|27577728|gb|CB000423.1|CB000423
EST:     TTATTCTTGGACACTCTGAAAGGAGGAGCTTGTTGGGTGAATCAAATGAG                         TTTGTTGGAGACAAAGTGGCATATGCGCTCTCTCAGGGCTTGAAGGTCATT
genomic: TTATTCTTGGACACTCTGAAAGGAGGAGTTTGTTGGGTGAATCAAATGAGgtatgatcta ... tgaattgcagTTTGTTGGAGACAAAGTGGCATATGCGCTCTCTCAGGGCTTGAAGGTCATT
EST: gi|218483167|gb|FG943231.1|FG943231
EST:     TTATTCTTGGACACTCTGAAAGGAGGAGTTTGTTGGGTGAATCAAATGAG                         TTTGTTGGAGACAAAGTGGCATATGCGCTCTCTCAGGGCTTGAAGGTCATT
genomic: TTATTCTTGGACACTCTGAAAGGAGGAGTTTGTTGGGTGAATCAAATGAGgtatgatcta ... tgaattgcagTTTGTTGGAGACAAAGTGGCATATGCGCTCTCTCAGGGCTTGAAGGTCATT
EST: gi|11173127|gb|AU164626.1|AU164626
EST:     GGTGAATCAAATGAG                         TTTGTTGGAGACAAAGTGGCATATGCGCTCTCTCAGGGCTTGAAGGTCATT
genomic: GGTGAATCAAATGAGgtatgatcta ... tgaattgcagTTTGTTGGAGACAAAGTGGCATATGCGCTCTCTCAGGGCTTGAAGGTCATT
EST: gi|33685619|gb|CF313858.1|CF313858
EST:     TTATTCTTGGACACTCTGAAAGGAGGAGTTTGTTGGGTGAATCAAATGAG                         TTTGTTGGAGACAAAGTGGCATATGCGCTCTCTCAGGGCTTGAAGGTCATT
genomic: TTATTCTTGGACACTCTGAAAGGAGGAGTTTGTTGGGTGAATCAAATGAGgtatgatcta ... tgaattgcagTTTGTTGGAGACAAAGTGGCATATGCGCTCTCTCAGGGCTTGAAGGTCATT
EST: gi|88582134|gb|CI699369.1|CI699369
EST:     TTATTCTTGGACACTCTGAAAGGAGGAGTTTGTTGGGTGAATCAAATGAG                         TTTGTTGGAGACAAAGTGGCATATGCGCTCTCTCAGGGCTTGAAGGTCATT
genomic: TTATTCTTGGACACTCTGAAAGGAGGAGTTTGTTGGGTGAATCAAATGAGgtatgatcta ... tgaattgcagTTTGTTGGAGACAAAGTGGCATATGCGCTCTCTCAGGGCTTGAAGGTCATT
EST: gi|4715957|gb|AU057073.1|AU057073
EST:     TTATTCTTGGACACTCTGAAAGGAGGAGTTTGTTGGGTGAATCAAATGAG                         TTTGTTGGAGACAAAGTGGCATATGCGCTCTCTCAGGGCTTGAAGGTCATT
genomic: TTATTCTTGGACACTCTGAAAGGAGGAGTTTGTTGGGTGAATCAAATGAGgtatgatcta ... tgaattgcagTTTGTTGGAGACAAAGTGGCATATGCGCTCTCTCAGGGCTTGAAGGTCATT
EST: gi|11863261|gb|AU063171.2|AU063171
EST:     TTATTCTTGGACACTCTGAAAGGAGGAGTTTGTTGGGTGAATCAAATGAG                         TTTGTTGGAGACAAAGTGGCATATGCGCTCTCTCAGGGCTTGAAGGGTCAT
genomic: TTATTCTTGGACACTCTGAAAGGAGGAGTTTGTTGGGTGAATCAAATGAGgtatgatcta ... tgaattgcagTTTGTTGGAGACAAAGTGGCATATGCGCTCTCTCAGGGCTTGAAGG-TCAT
EST: gi|58604231|gb|CK014759.1|CK014759
EST:     TTATTCTTGGACACTCTGAAAGGAGGAGTTTGTTGGGTGAATCAAATGAG                         TTTGTCGGAGACAAAGTGGCATATGCGCTCTCTCAGGGCTTGAAGGTCATT
genomic: TTATTCTTGGACACTCTGAAAGGAGGAGTTTGTTGGGTGAATCAAATGAGgtatgatcta ... tgaattgcagTTTGTTGGAGACAAAGTGGCATATGCGCTCTCTCAGGGCTTGAAGGTCATT
EST: gi|12405253|gb|AU166854.1|AU166854
EST:     TTATTCTTGGACACTCTGAAAGGAGGAGTTTGTTGGGTGAATCAAATGAG                         TTTGTTGGAGACAAAGTGGCATATGCGCTCTNTNAGGGCTTGAAGGTCATT
genomic: TTATTCTTGGACACTCTGAAAGGAGGAGTTTGTTGGGTGAATCAAATGAGgtatgatcta ... tgaattgcagTTTGTTGGAGACAAAGTGGCATATGCGCTCTCTCAGGGCTTGAAGGTCATT
EST: gi|33687307|gb|CF315546.1|CF315546
EST:     TTATTCTTGGACACTCTGAAAGGAGGAGTTTGTTGGGTGAATCAAATGAG                         TTTGTTGGAGACAAAGTGGCATATGCGCTCTCTCAGGGCTTGAAGGTCATT
genomic: TTATTCTTGGACACTCTGAAAGGAGGAGTTTGTTGGGTGAATCAAATGAGgtatgatcta ... tgaattgcagTTTGTTGGAGACAAAGTGGCATATGCGCTCTCTCAGGGCTTGAAGGTCATT
EST: gi|88404380|gb|CI578257.1|CI578257
EST:     TTATTCTTGGACACTCTGAAAGGAGGAGTTTGTTGGGTGAATCAAATGAG                         TTTGTTGGAGACAAAGTGGCATATGCGCTCTCTCAGGGCTTGAAGGTCATT
genomic: TTATTCTTGGACACTCTGAAAGGAGGAGTTTGTTGGGTGAATCAAATGAGgtatgatcta ... tgaattgcagTTTGTTGGAGACAAAGTGGCATATGCGCTCTCTCAGGGCTTGAAGGTCATT
EST: gi|66922499|gb|CX109347.1|CX109347
EST:     TTATTCTTGGACACTCTGAAAGGAGGACTTTGTTGGGCGAATCAAATGAG                         TTTGTTGGACACAAAGTGGCATATGCGCTCTCTCAGGGCTTGAACGTCATT
genomic: TTATTCTTGGACACTCTGAAAGGAGGAGTTTGTTGGGTGAATCAAATGAGgtatgatcta ... tgaattgcagTTTGTTGGAGACAAAGTGGCATATGCGCTCTCTCAGGGCTTGAAGGTCATT
EST: gi|58686470|gb|CK075157.1|CK075157
EST:     TTATTCTTGGACACTCTGAAAGGAGGAGTTTGTTGGGTGAATCAAATGAG                         TTTGTTGGAGACAAAGTGGCATATGCGCTCTCTCAGGGCTTGAAGGTCATT
genomic: TTATTCTTGGACACTCTGAAAGGAGGAGTTTGTTGGGTGAATCAAATGAGgtatgatcta ... tgaattgcagTTTGTTGGAGACAAAGTGGCATATGCGCTCTCTCAGGGCTTGAAGGTCATT
EST: gi|38480889|gb|CF964978.1|CF964978
EST:     TTATTCTTGGACACTCTGAAAGGAGGAGTTTGTTGGGTGAATCAAATGAG                         TTTGTTGGAGACAAAGTGGCATATGCGCTCTCTCAGGGCTTGAAGGTCATT
genomic: TTATTCTTGGACACTCTGAAAGGAGGAGTTTGTTGGGTGAATCAAATGAGgtatgatcta ... tgaattgcagTTTGTTGGAGACAAAGTGGCATATGCGCTCTCTCAGGGCTTGAAGGTCATT
EST: gi|163929017|gb|EG709795.1|EG709795
EST:     TTATTCTTGGACACTCTGAAAGGAGGAGTTTGTTGGGTGAATCAAATGAG                         TTTGTTGGAGACAAAGTGGCATATGCGCTCTCTCAGGGCTTGAAGGTCATT
genomic: TTATTCTTGGACACTCTGAAAGGAGGAGTTTGTTGGGTGAATCAAATGAGgtatgatcta ... tgaattgcagTTTGTTGGAGACAAAGTGGCATATGCGCTCTCTCAGGGCTTGAAGGTCATT
EST: gi|88331636|gb|CI675981.1|CI675981
EST:     TTATTCTTGGACACTCTGAAAGGAGGAGTTTGTTGGGTGAATCAAATGAG                         TTTGTTGGAGACAAAGTGGCATATGCGCTCTCTCAGGGCTTGAAGGTCATT
genomic: TTATTCTTGGACACTCTGAAAGGAGGAGTTTGTTGGGTGAATCAAATGAGgtatgatcta ... tgaattgcagTTTGTTGGAGACAAAGTGGCATATGCGCTCTCTCAGGGCTTGAAGGTCATT
EST: gi|300215919|gb|HO088545.1|HO088545
EST:     TTATTCTTGGACACTCTGAAAGGAGGAGTTTGTTGGGTGAATCAAATGAG                         TTTGTTGGAGACAAAGTGGCATATGCGCTCTCTCAGGGCTTGAAGGTCATT
genomic: TTATTCTTGGACACTCTGAAAGGAGGAGTTTGTTGGGTGAATCAAATGAGgtatgatcta ... tgaattgcagTTTGTTGGAGACAAAGTGGCATATGCGCTCTCTCAGGGCTTGAAGGTCATT
EST: gi|58676943|gb|CK065630.1|CK065630
EST:     TTATTCTTGGACACTCTGAAAGGAGGAGTTTGTTGGGTGAATCAAATGAG                         TTTGTTGGAGACAAAGTGGCATATGCGCTCTCTCAGGGCTTGAAGGTCATT
genomic: TTATTCTTGGACACTCTGAAAGGAGGAGTTTGTTGGGTGAATCAAATGAGgtatgatcta ... tgaattgcagTTTGTTGGAGACAAAGTGGCATATGCGCTCTCTCAGGGCTTGAAGGTCATT
EST: gi|319908632|gb|HS977760.1|HS977760
EST:     TTATTCTTGGACACTCTGAAAGGAGGAGCTTGTTGGGTGAATCAAATGAG                         TTTGTTGGAGACAAAGTGGCATATGCGCTCTCTCAGGGCTTGAAGGTCATT
genomic: TTATTCTTGGACACTCTGAAAGGAGGAGTTTGTTGGGTGAATCAAATGAGgtatgatcta ... tgaattgcagTTTGTTGGAGACAAAGTGGCATATGCGCTCTCTCAGGGCTTGAAGGTCATT
EST: gi|300216330|gb|HO088115.1|HO088115
EST:     TTATTCTTGGACACTCTGAAAGGAGGAGTTTGTTGGGTGAATCAAATGAG                         TTTGT-GGAGACAAAGTGGCATATGCGCTCTCTCAGGGCTTGAAGGTCATT
genomic: TTATTCTTGGACACTCTGAAAGGAGGAGTTTGTTGGGTGAATCAAATGAGgtatgatcta ... tgaattgcagTTTGTTGGAGACAAAGTGGCATATGCGCTCTCTCAGGGCTTGAAGGTCATT
EST: gi|33663593|gb|CF294560.1|CF294560
EST:     TTATTCTTGGACACTCTGAAAGGAGGAGTTTGTTGGGTGAATCAAATGAG                         TTTGTTGGAGACAAAGTGGCATATGCGCTCTCTCAGGGCTTGAAGGTCATT
genomic: TTATTCTTGGACACTCTGAAAGGAGGAGTTTGTTGGGTGAATCAAATGAGgtatgatcta ... tgaattgcagTTTGTTGGAGACAAAGTGGCATATGCGCTCTCTCAGGGCTTGAAGGTCATT
EST: gi|2443014|gb|C74785.1|C74785
EST:     TTATTCTTGGACACTCTGAAAGGAGGAGTTTGTTGGGTGAATCAAATGAG                         TTTGTTGGAGACAAAGTGGCATATGCGCTCTCTCAGGGCTTGAAGGTCATT
genomic: TTATTCTTGGACACTCTGAAAGGAGGAGTTTGTTGGGTGAATCAAATGAGgtatgatcta ... tgaattgcagTTTGTTGGAGACAAAGTGGCATATGCGCTCTCTCAGGGCTTGAAGGTCATT
EST: gi|38473212|gb|CF957344.1|CF957344
EST:     TTATTCTTGGACACTCTGAAAGGAGGAGTTTGTTGGGTGAATCAAATGAG                         TTTGTTGGAGACAAAGTGGCATATGCGCTCTCTCAGGGCTTGAAGGTCATT
genomic: TTATTCTTGGACACTCTGAAAGGAGGAGTTTGTTGGGTGAATCAAATGAGgtatgatcta ... tgaattgcagTTTGTTGGAGACAAAGTGGCATATGCGCTCTCTCAGGGCTTGAAGGTCATT
EST: gi|163921200|gb|EG714125.1|EG714125
EST:     TTATTCTTGGACACTCTGAAAGGAGGAGTTTGTTGGGTGAATCAAATGAG                         TTTGTTGGAGACAAAGTGGCATATGCGCTCTCTCAGGGCTTGAAGGTCATT
genomic: TTATTCTTGGACACTCTGAAAGGAGGAGTTTGTTGGGTGAATCAAATGAGgtatgatcta ... tgaattgcagTTTGTTGGAGACAAAGTGGCATATGCGCTCTCTCAGGGCTTGAAGGTCATT
EST: gi|27576696|gb|CA999390.1|CA999390
EST:     TTATTCTTGGACACTCTGAAAGGAGGAGCTTGTTGGGTGAATCAAATGAG                         TTTGTTGGAGACAAAGTGGCATATGCGCTCTC
genomic: TTATTCTTGGACACTCTGAAAGGAGGAGTTTGTTGGGTGAATCAAATGAGgtatgatcta ... tgaattgcagTTTGTTGGAGACAAAGTGGCATATGCGCTCTC
EST: gi|88592661|gb|CI710780.1|CI710780
EST:     TTATTCTTGGACACTCTGAAAGGAGGAGTTTGTTGGGTGAATCAAATGAG                         TTTGTTGGAGACAAAGTGGCATATGCGCTCTCTCAGGGC
genomic: TTATTCTTGGACACTCTGAAAGGAGGAGTTTGTTGGGTGAATCAAATGAGgtatgatcta ... tgaattgcagTTTGTTGGAGACAAAGTGGCATATGCGCTCTCTCAGGGC
EST: gi|218498238|gb|FG970096.1|FG970096
EST:     TTATTCTTGGACACTCTGAAAGGAGGAGTTTGTTGGGTGAATCAAATGAG                         TTTGTTGGAGACAAAGTGGCATATGCGCTCTCTCAGGGCTTGAAGGTCATT
genomic: TTATTCTTGGACACTCTGAAAGGAGGAGTTTGTTGGGTGAATCAAATGAGgtatgatcta ... tgaattgcagTTTGTTGGAGACAAAGTGGCATATGCGCTCTCTCAGGGCTTGAAGGTCATT
EST: gi|13806459|gb|AU181529.1|AU181529
EST:     TTATTCTTGGACACTCTGAAAGGAGGAGTTTGTTGGGTGAATCAAATGAG                         TTTGTTGGAGACAAAGTGGCATATGCGCTCTCTNAGGGCTTGAAGGTCATT
genomic: TTATTCTTGGACACTCTGAAAGGAGGAGTTTGTTGGGTGAATCAAATGAGgtatgatcta ... tgaattgcagTTTGTTGGAGACAAAGTGGCATATGCGCTCTCTCAGGGCTTGAAGGTCATT
EST: gi|33691197|gb|CF319436.1|CF319436
EST:     TTATTCTTGGACACTCTGAAAGGAGGAGTTTGTTGGGTGAATCAAATGAG                         TTTGTTGGAGACAAAGTGGCATATGCGCTCTCTCAGGGCTTGAAGGTCATT
genomic: TTATTCTTGGACACTCTGAAAGGAGGAGTTTGTTGGGTGAATCAAATGAGgtatgatcta ... tgaattgcagTTTGTTGGAGACAAAGTGGCATATGCGCTCTCTCAGGGCTTGAAGGTCATT
EST: gi|27577196|gb|CA999890.1|CA999890
EST:     TTATTCTTGGACACTCTGAAAGGAGGAGCTTGTTGGGTGAATCAAATGAG                         TTTGTTGGAGACAAAGTGGCATATGCGCTCTCT
genomic: TTATTCTTGGACACTCTGAAAGGAGGAGTTTGTTGGGTGAATCAAATGAGgtatgatcta ... tgaattgcagTTTGTTGGAGACAAAGTGGCATATGCGCTCTCT
EST: gi|27554252|gb|CA998152.1|CA998152
EST:     TTATTCTTGGACACTCTGAAAGGAGGAGCTTGTTGGGTGAATCAAATGAG                         TTTGTTGGAGACAAAGTGGCATATGCGCTCTC
genomic: TTATTCTTGGACACTCTGAAAGGAGGAGTTTGTTGGGTGAATCAAATGAGgtatgatcta ... tgaattgcagTTTGTTGGAGACAAAGTGGCATATGCGCTCTC
EST: gi|33662374|gb|CF293341.1|CF293341
EST:     TTATTCTTGGACACTCTGAAAGGAGGAGTTTGTTGGGTGAATCAAATGAG                         TTTGTTGGAGACAAAGTGGCATAAGCGCTCTCTCAGGGCTTGAAGGTCATT
genomic: TTATTCTTGGACACTCTGAAAGGAGGAGTTTGTTGGGTGAATCAAATGAGgtatgatcta ... tgaattgcagTTTGTTGGAGACAAAGTGGCATATGCGCTCTCTCAGGGCTTGAAGGTCATT
EST: gi|58668510|gb|CK057196.1|CK057196
EST:     TTATTCTTGGACACTCTGAAAGGAGGAGTTTGTTGGGTGAATCAAATGAG                         TTTGTTGGAGAC
genomic: TTATTCTTGGACACTCTGAAAGGAGGAGTTTGTTGGGTGAATCAAATGAGgtatgatcta ... tgaattgcagTTTGTTGGAGAC
EST: gi|88372072|gb|CI641707.1|CI641707
EST:     TTATTCTTGGACACTCTGAAAGGAGGAGTTTGTTGGGTGAATCAAATGAG                         TTTGTTGGAGACAAAGTGGCATATGCGCTCTCTCAGGGCTTGAAGGTCAT
genomic: TTATTCTTGGACACTCTGAAAGGAGGAGTTTGTTGGGTGAATCAAATGAGgtatgatcta ... tgaattgcagTTTGTTGGAGACAAAGTGGCATATGCGCTCTCTCAGGGCTTGAAGGTCAT
EST: gi|33692821|gb|CF321060.1|CF321060
EST:     TTATTCTTGGACACTCTGAAAGGAGGAGTTTGTTGGGTGAATCAAATGAG                         TTTGTTGGAGACAAAGTGGCATATGCGCTCTCTCAGGGCTTGAAGGTCATT
genomic: TTATTCTTGGACACTCTGAAAGGAGGAGTTTGTTGGGTGAATCAAATGAGgtatgatcta ... tgaattgcagTTTGTTGGAGACAAAGTGGCATATGCGCTCTCTCAGGGCTTGAAGGTCATT
EST: gi|163927169|gb|EG715190.1|EG715190
EST:     TTATTCTTGGACACTCTGAAAGGAGGAGTTTGTTGGGTGAATCAAATGAG                         TTTGTTGGAGACAAAGTGGCATATGCGCTCTCTCAGGGCTTGAAGGTCATT
genomic: TTATTCTTGGACACTCTGAAAGGAGGAGTTTGTTGGGTGAATCAAATGAGgtatgatcta ... tgaattgcagTTTGTTGGAGACAAAGTGGCATATGCGCTCTCTCAGGGCTTGAAGGTCATT
EST: gi|88590954|gb|CI707857.1|CI707857
EST:     TTATTCTTGGACACTCTGAAAGGAGGAGTTTGTTGGGTGAATCAAATGAG                         TTTGTNGGAGACAAAGTGGCA
genomic: TTATTCTTGGACACTCTGAAAGGAGGAGTTTGTTGGGTGAATCAAATGAGgtatgatcta ... tgaattgcagTTTGTTGGAGACAAAGTGGCA
EST: gi|88338586|gb|CI645840.1|CI645840
EST:     TTATTCTTGGACACTCTGAAAGGAGGAGTTTGTTGGGTGAATCAAATGAG                         TTTGTTGGAGACAAAGTGGCATATGCGCTCTCTCAGGGCTTGAAGGTCATT
genomic: TTATTCTTGGACACTCTGAAAGGAGGAGTTTGTTGGGTGAATCAAATGAGgtatgatcta ... tgaattgcagTTTGTTGGAGACAAAGTGGCATATGCGCTCTCTCAGGGCTTGAAGGTCATT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CGCTGAGATGCTTGTCAACCTTAGTATTCCCTGGGTTATTCTTGGACACTCTGAAAGGAGGAGTTTGTTGGGTGAATCAAATGAGgtatgatctagtttacattctatgaaatgtgcagatatgaattttgtatagttttagctggaaatagtgcaacaagccaaacctggggataacggtcact

- - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGGAG