1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
AGTGGTCAACGGCGCTCTTGAATATCTTGCAAAGGACCTTGGAATTTCTGAGAATGCTGTGTTACAAGgtgggacatccatttacttggtctataaaatccatgctttatttttagtatatattccttctttggtctctgtaaaaggcacatctcaaattttagatca...
species | Oryza sativa |
transcript | LOC_Os01g04190.3 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TGAATATCTTGCAAAGGACCTTGGAATTTCTGAGAATGCTGTGTTACAAG GATGGGTGGTTAGCACAACCCTGGCTGGEST: gi|88385512|gb|CI564172.1|CI564172
genomic: TGAATATCTTGCAAAGGACCTTGGAATTTCTGAGAATGCTGTGTTACAAGgtgggacatc ... tgtctcttagGATGGGTGGTTAGCACAACCCTGGCTGG
EST: TGAATATCTTGCAAAGGACCTTGGAATTTCTGAGAATGCTGTGTTACAAG GATGGGTGGTTAGCACAACCCTGGCTGGTGCGACAGCAGGTTCTTTTACTGEST: gi|88368202|gb|CI575084.1|CI575084
genomic: TGAATATCTTGCAAAGGACCTTGGAATTTCTGAGAATGCTGTGTTACAAGgtgggacatc ... tgtctcttagGATGGGTGGTTAGCACAACCCTGGCTGGTGCGACAGCAGGTTCTTTTACTG
EST: TGAATATCTTGCAAAGGACCTTGGAATTTCTGAGAATGCTGTGTTACAAG GATGGGTGGTTAGCACAACCCTGGCEST: gi|300215629|gb|HO088255.1|HO088255
genomic: TGAATATCTTGCAAAGGACCTTGGAATTTCTGAGAATGCTGTGTTACAAGgtgggacatc ... tgtctcttagGATGGGTGGTTAGCACAACCCTGGC
EST: TGAATATCTTGCAAAGGACCTTGGAATTGCTGAGAATGCTGTGTTACAAG GATGGGTGGTTAGCACAACCCTGGCTGGTGCGACAGCAGGTTCTTTTACTG
genomic: TGAATATCTTGCAAAGGACCTTGGAATTTCTGAGAATGCTGTGTTACAAGgtgggacatc ... tgtctcttagGATGGGTGGTTAGCACAACCCTGGCTGGTGCGACAGCAGGTTCTTTTACTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGTGGTCAACGGCGCTCTTGAATATCTTGCAAAGGACCTTGGAATTTCTGAGAATGCTGTGTTACAAGgtgggacatccatttacttggtctataaaatccatgctttatttttagtatatattccttctttggtctctgtaaaaggcacatctcaaattttagatca
- - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG