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GAAAGGGGGCAATTTCACAGCATCGGATATCCCATGCTGATGACCTTCCTAGAATACATGGAAAGGACTCGAGCAAGACAAGTCGTAGAGAGGCTGACCAgtaagtttaggaaataatatattctctccaaataagcatagcacatcttcgtacaatttgcaacattacattactgtttcagtgcatatattctaaagtt...
species | Oryza sativa |
transcript | LOC_Os01g68810.1 |
intron # | 34 |
splice site | 5' |
intron type | U2 |
EST: AGAATACATGGAAAGGACTCGAGCAAGACAAGTCGTAGAGAGGCTGACCA AGTACATGAGAGAGAATGGGAAGAGGAAAAGCGATCAAGAACGGAAACTAAEST: gi|29632459|gb|CB637468.1|CB637468
genomic: AGAATACATGGAAAGGACTCGAGCAAGACAAGTCGTAGAGAGGCTGACCAgtaagtttag ... tgaactgcagAGTACATGAGAGAGAATGGGAAGAGGAAAAGCGATCAAGAACGGAAACTAA
EST: AGAATACATGGAAAGGACTCGAGCAAGACAAGTCGTAGAGAGGCTGACCA AGTACATGAGAGAGAATGGGAAGAGGAAAAGCGATCAAGAACGGAAACTAAEST: gi|8956133|gb|BE229937.1|BE229937
genomic: AGAATACATGGAAAGGACTCGAGCAAGACAAGTCGTAGAGAGGCTGACCAgtaagtttag ... tgaactgcagAGTACATGAGAGAGAATGGGAAGAGGAAAAGCGATCAAGAACGGAAACTAA
EST: AGAATACATGGAAAGGACTCGAGCAAGACAAGTCGTAGAGAGGCTGACCA AGTACATGAGAGAGAATGGGAAGAGGAAAAGCGATCAAGAACGGAAACTAAEST: gi|29677533|gb|CB673808.1|CB673808
genomic: AGAATACATGGAAAGGACTCGAGCAAGACAAGTCGTAGAGAGGCTGACCAgtaagtttag ... tgaactgcagAGTACATGAGAGAGAATGGGAAGAGGAAAAGCGATCAAGAACGGAAACTAA
EST: AGAATACATGGAAAGGACTCGAGCAAGACAAGTCGTAGAGAGGCTGACCA AGTACATGAGAGAGAATGGGAAGAGGAAAAGCGATCAAGAACGGAAACTAAEST: gi|8956171|gb|BE229975.1|BE229975
genomic: AGAATACATGGAAAGGACTCGAGCAAGACAAGTCGTAGAGAGGCTGACCAgtaagtttag ... tgaactgcagAGTACATGAGAGAGAATGGGAAGAGGAAAAGCGATCAAGAACGGAAACTAA
EST: AGAATACATGGAAAGGACTCGAGCAAGACAAGTCGTATAGAGGCTGACCA AGTACATGAGAGAGAATGGGAAGAGGAAAAGCGATCAAGAACGGAAACTAAEST: gi|8956165|gb|BE229969.1|BE229969
genomic: AGAATACATGGAAAGGACTCGAGCAAGACAAGTCGTAGAGAGGCTGACCAgtaagtttag ... tgaactgcagAGTACATGAGAGAGAATGGGAAGAGGAAAAGCGATCAAGAACGGAAACTAA
EST: AGAATACATGGAAAGGACTCGAGCAAGACAAGTCGTAGAGAGGCTGACCA AGTACATGAGAGAGAATGGGAAGAGGAAAAGCGATCAAGAACGGAAACTAAEST: gi|29677535|gb|CB673810.1|CB673810
genomic: AGAATACATGGAAAGGACTCGAGCAAGACAAGTCGTAGAGAGGCTGACCAgtaagtttag ... tgaactgcagAGTACATGAGAGAGAATGGGAAGAGGAAAAGCGATCAAGAACGGAAACTAA
EST: AGAATACATGGAAAGGACTCGAGCAAGACAAGTCGTAGAGAGGCTGACCA AGTACATGAGAGAGAATGGGAAGAGGAAAAGCGATCAAGAACGGAAACTAAEST: gi|28298267|gb|CB238497.1|CB238497
genomic: AGAATACATGGAAAGGACTCGAGCAAGACAAGTCGTAGAGAGGCTGACCAgtaagtttag ... tgaactgcagAGTACATGAGAGAGAATGGGAAGAGGAAAAGCGATCAAGAACGGAAACTAA
EST: CGAGCAAGACAAGTCGTAGAGAGGCTGACCA AGTACATGAGAGAGAATGGGAAGAGGAAAAGCGATCAAGAACGGAAACTAA
genomic: CGAGCAAGACAAGTCGTAGAGAGGCTGACCAgtaagtttag ... tgaactgcagAGTACATGAGAGAGAATGGGAAGAGGAAAAGCGATCAAGAACGGAAACTAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAAAGGGGGCAATTTCACAGCATCGGATATCCCATGCTGATGACCTTCCTAGAATACATGGAAAGGACTCGAGCAAGACAAGTCGTAGAGAGGCTGACCAgtaagtttaggaaataatatattctctccaaataagcatagcacatcttcgtacaatttgcaacattacattactgtttcagtgcatatattctaaagtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttctctcc