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AGGAGAGATGTTTATGGAGCTTGGGAACAATACCTTGGCTTGGAACATACTGACACAACACCAAAAAGGTCTTATACAGCCAATCAGgtaatcagtgttggctaataatggtttttgcgtacaattcaaaactggcaagaaataatctgagtgtttaagatttaagagtgtaaatatctgtttattt...
species | Oryza sativa |
transcript | LOC_Os12g30540.1 |
intron # | 31 |
splice site | 5' |
intron type | U2 |
EST: ATACTGACACAACACCAAAAAGGTCTTATACAGCCAATCAG AATCGTCACACTTTTGAGAAGCCTGTGAAAATTTATAATTGAGAAGATTTAEST: gi|86854386|gb|CI256508.1|CI256508
genomic: ATACTGACACAACACCAAAAAGGTCTTATACAGCCAATCAGgtaatcagtg ... aactatgcagAATCGTCACACTTTTGAGAAGCCTGTGAAAATTTATAATTGAGAAGATTTA
EST: GCTTGGAACATACTGACACAACACCAAAAAGGTCTTATACAGCCAATCAG AATCGTCACACTTTTGAGAAGCCTGTGAAAATTTATAATTGAGAAGATTTAEST: gi|218486792|gb|FG957440.1|FG957440
genomic: GCTTGGAACATACTGACACAACACCAAAAAGGTCTTATACAGCCAATCAGgtaatcagtg ... aactatgcagAATCGTCACACTTTTGAGAAGCCTGTGAAAATTTATAATTGAGAAGATTTA
EST: GCTTGGAACATACTGACACAACACCAAAAAGGTCTTATACAGCCAATCAG AATCGTCACACTTTTGAGAAGCCTGTGAAAATTTATAATTGAGAAGATTTAEST: gi|66920611|gb|CX107459.1|CX107459
genomic: GCTTGGAACATACTGACACAACACCAAAAAGGTCTTATACAGCCAATCAGgtaatcagtg ... aactatgcagAATCGTCACACTTTTGAGAAGCCTGTGAAAATTTATAATTGAGAAGATTTA
EST: CTGACACAACACCAAAAAGGTCTTATACAGCCAATCAG AATCGTCACACTTTTGAGAAGCCTGTGAAAATTTATAATTGAGAAGATTTAEST: gi|29637182|gb|CB642191.1|CB642191
genomic: CTGACACAACACCAAAAAGGTCTTATACAGCCAATCAGgtaatcagtg ... aactatgcagAATCGTCACACTTTTGAGAAGCCTGTGAAAATTTATAATTGAGAAGATTTA
EST: GCTTGGAACATACTGACACAACACCAAAAAGGTCTTATACAGCCAATCAG AATCGTCACACTTTTGAGAAGCCTGTGAAAATTTATAATTGAGAAGATTTAEST: gi|163925839|gb|EG712263.1|EG712263
genomic: GCTTGGAACATACTGACACAACACCAAAAAGGTCTTATACAGCCAATCAGgtaatcagtg ... aactatgcagAATCGTCACACTTTTGAGAAGCCTGTGAAAATTTATAATTGAGAAGATTTA
EST: GCTTGGAACATACTGACACAACACCAAAAAGGTCTTATACAGCCAATCAG AATCGTCACACTTTTGAGAAGCCTGTGAAAATTTATAATTGAGAAGATTTAEST: gi|29614413|gb|CB619426.1|CB619426
genomic: GCTTGGAACATACTGACACAACACCAAAAAGGTCTTATACAGCCAATCAGgtaatcagtg ... aactatgcagAATCGTCACACTTTTGAGAAGCCTGTGAAAATTTATAATTGAGAAGATTTA
EST: GCTTGGAACATACTGACACAACACCAAAAAGGTCTTATACAGCCAATCAG AATCGTCACACTTTTGAGAAGCCTGTGAAAATTTATAATTGAGAAGATTTA
genomic: GCTTGGAACATACTGACACAACACCAAAAAGGTCTTATACAGCCAATCAGgtaatcagtg ... aactatgcagAATCGTCACACTTTTGAGAAGCCTGTGAAAATTTATAATTGAGAAGATTTA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGGAGAGATGTTTATGGAGCTTGGGAACAATACCTTGGCTTGGAACATACTGACACAACACCAAAAAGGTCTTATACAGCCAATCAGgtaatcagtgttggctaataatggtttttgcgtacaattcaaaactggcaagaaataatctgagtgtttaagatttaagagtgtaaatatctgtttattt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - agaaataa