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TAGAGGAATTGGAGCTTCACGCAATTAGAACTGGCCATTCACACATGTATTTGCATGTATTGAAAGAACAAAAGCTTCTTGATCTTGTTCCAGTTTCAGGgtaagtgcgcatatttctttttgggaacatatgcttgcttatgaggttggtcttctcaatgatcttcttatcttactcag
species | Oryza sativa |
transcript | LOC_Os05g22940.1 |
intron # | 31 |
splice site | 5' |
intron type | U2 |
EST: TGCATGTATTGGAAAGAACAAAAGCTTCTTGATCTTGTTCCAGTTTCAGG GAATACAGTTTTGGATGTTGGTCAAGATGAAGCTACTGCATATTCACTTTTEST: gi|58672807|gb|CK061493.1|CK061493
genomic: TGCATGTATT-GAAAGAACAAAAGCTTCTTGATCTTGTTCCAGTTTCAGGgtaagtgcgc ... tcttactcagGAATACAGTTTTGGATGTTGGTCAAGATGAAGCTACTGCATATTCACTTTT
EST: GTTCCAGTTTCAGG GAATACAGTTTTGGATGTTGGTCAAGATGAAGCTACTGCATATTCGCTTTTEST: gi|29681304|gb|CB677579.1|CB677579
genomic: GTTCCAGTTTCAGGgtaagtgcgc ... tcttactcagGAATACAGTTTTGGATGTTGGTCAAGATGAAGCTACTGCATATTCACTTTT
EST: TTGCATGTATTGAAAGAACAAAAGCTTCTTGATCTTGTTCCAGTTTCAGG GAATACAGTTTTGGATGTTGGTCAAGATGAAGCTACTGCATATTCACTTTTEST: gi|29624333|gb|CB629344.1|CB629344
genomic: TTGCATGTATTGAAAGAACAAAAGCTTCTTGATCTTGTTCCAGTTTCAGGgtaagtgcgc ... tcttactcagGAATACAGTTTTGGATGTTGGTCAAGATGAAGCTACTGCATATTCACTTTT
EST: TTGCATGTATTGAAAGAACAAAAGCTTCTTGATCTTGTTCCAGTTTCAGG GAATACAGTTTTGGATGTTGGTCAAGATGAAGCTACTGCATATTCACTTTTEST: gi|58691648|gb|CK080335.1|CK080335
genomic: TTGCATGTATTGAAAGAACAAAAGCTTCTTGATCTTGTTCCAGTTTCAGGgtaagtgcgc ... tcttactcagGAATACAGTTTTGGATGTTGGTCAAGATGAAGCTACTGCATATTCACTTTT
EST: TTGCATGTATTGAAAGAACAAAAGCTTCTTGATCTTGTTCCAGTTTCAGG GAATACAGTTTTGGATGTTGGTCAAGATGAAGCTACTGCATATTCACTTTTEST: gi|58665399|gb|CK054085.1|CK054085
genomic: TTGCATGTATTGAAAGAACAAAAGCTTCTTGATCTTGTTCCAGTTTCAGGgtaagtgcgc ... tcttactcagGAATACAGTTTTGGATGTTGGTCAAGATGAAGCTACTGCATATTCACTTTT
EST: TTGCATGTATTGAAAGAACAAAAGCTTCTTGATCTTGTTCCAGTTTCAGG GAATACAGTTTTGGATGTTGGTCAAGATGAAGCTACTGCATATTCACTTTTEST: gi|88311054|gb|CI657967.1|CI657967
genomic: TTGCATGTATTGAAAGAACAAAAGCTTCTTGATCTTGTTCCAGTTTCAGGgtaagtgcgc ... tcttactcagGAATACAGTTTTGGATGTTGGTCAAGATGAAGCTACTGCATATTCACTTTT
EST: TTGCATGTATTGAAAGAACAAAAGCTTCTTGATCTTGTTCCAGTTTCAGG GAATACAGTTTTGGATGTTGGTCAAGATGAAGCTACTGCATATTCACTTTT
genomic: TTGCATGTATTGAAAGAACAAAAGCTTCTTGATCTTGTTCCAGTTTCAGGgtaagtgcgc ... tcttactcagGAATACAGTTTTGGATGTTGGTCAAGATGAAGCTACTGCATATTCACTTTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TAGAGGAATTGGAGCTTCACGCAATTAGAACTGGCCATTCACACATGTATTTGCATGTATTGAAAGAACAAAAGCTTCTTGATCTTGTTCCAGTTTCAGGgtaagtgcgcatatttctttttgggaacatatgcttgcttatgaggttggtcttctcaatgatcttcttatcttactcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC