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TTTCCATCGTCCGCAAGAAAGATTCGGGGGTTTCTCAAATACAGGATCAAAAGTTGCAGGATGGCAGCTTTACAGAACTCCCCAGAAAACTGCTGCTATGgtatgaaactgtttctcactatcagttatgtccgtagcatggccttgtgttggcaattgtttacataatcaattatttctcatgccagttcgaaaatata...
species | Oryza sativa |
transcript | LOC_Os01g39380.1 |
intron # | 31 |
splice site | 5' |
intron type | U2 |
EST: AAGTTGCAGGATGGCAGCTTTACAGAACTCCCCAGAAAACTGCTGCTATG GTGAGATGTGTAGCATCGGACCTGGATCGGAAAAGAATCTGCAGCGGTGGTEST: gi|86893144|gb|CI333425.1|CI333425
genomic: AAGTTGCAGGATGGCAGCTTTACAGAACTCCCCAGAAAACTGCTGCTATGgtatgaaact ... cttttgacagGTGAGATGTGTAGCATCGGACCTGGATCGGAAAAGAATCTGCAGCGGTGGT
EST: AAGTTGCAGGATGGCAGCTTTACAGAACTCCCCAGAAAACTGCTGCTATG GTGAGATGTGTAGCATCGGACCTGGATCGGAAAAGAATCTGCAGCGGTGGTEST: gi|29628945|gb|CB633956.1|CB633956
genomic: AAGTTGCAGGATGGCAGCTTTACAGAACTCCCCAGAAAACTGCTGCTATGgtatgaaact ... cttttgacagGTGAGATGTGTAGCATCGGACCTGGATCGGAAAAGAATCTGCAGCGGTGGT
EST: AAGTTGCAGGATGGCAGCTTTACAGAACTCCCCAGAAAACTGCTGCTATG GTGAGATGTGTAGCATCGGACCTGGATCGGAAAAGAATTTGCAGCGGTGGTEST: gi|29641895|gb|CB646902.1|CB646902
genomic: AAGTTGCAGGATGGCAGCTTTACAGAACTCCCCAGAAAACTGCTGCTATGgtatgaaact ... cttttgacagGTGAGATGTGTAGCATCGGACCTGGATCGGAAAAGAATCTGCAGCGGTGGT
EST: AAGTTGCAGGATGGCAGCTTTACAGAACTCCCCAGAAAACTGCTGCTATG GTGAGATGTGTAGCATCGGACCTGGATCGGAAAAGAATCTGCAGCGGTGGTEST: gi|86884600|gb|CI312979.1|CI312979
genomic: AAGTTGCAGGATGGCAGCTTTACAGAACTCCCCAGAAAACTGCTGCTATGgtatgaaact ... cttttgacagGTGAGATGTGTAGCATCGGACCTGGATCGGAAAAGAATCTGCAGCGGTGGT
EST: AAGTTGCAGGATGCCAGCTTTACAGAACTCCCCAAAAAACTGCTGCTATG TTGAGATGTTTAGCATCGGACCTGGATCGGAAAAGAATCTGCAGCGGTGGTEST: gi|86257231|gb|CI004049.1|CI004049
genomic: AAGTTGCAGGATGGCAGCTTTACAGAACTCCCCAGAAAACTGCTGCTATGgtatgaaact ... cttttgacagGTGAGATGTGTAGCATCGGACCTGGATCGGAAAAGAATCTGCAGCGGTGGT
EST: AAGTTGCAGGATGGCAGCTTTACAGAACTCCCCAGAAAACTGCTGCTATG GTGAGATGTGTAGCATCGGACCTGGATCGGAAAAGAATCTGCAGCGGTGGTEST: gi|29639658|gb|CB644667.1|CB644667
genomic: AAGTTGCAGGATGGCAGCTTTACAGAACTCCCCAGAAAACTGCTGCTATGgtatgaaact ... cttttgacagGTGAGATGTGTAGCATCGGACCTGGATCGGAAAAGAATCTGCAGCGGTGGT
EST: AAGTTGCAGGATGGCAGCTTTACAGAACTCCCCAGAAAACTGCTGCTATG GTGAGATGTGTAGCATCGGACCTGGATCGGAAAAGAATCTGCAGCGGTGGTEST: gi|88523777|gb|CI451629.1|CI451629
genomic: AAGTTGCAGGATGGCAGCTTTACAGAACTCCCCAGAAAACTGCTGCTATGgtatgaaact ... cttttgacagGTGAGATGTGTAGCATCGGACCTGGATCGGAAAAGAATCTGCAGCGGTGGT
EST: AAGTTGCAGGATGGCAGCTTTACAGAACTCCCCAGAAAACTGCTGCTATG GTGAGATGTGTAGCATCGGACCTGGATCGGAAAAGAATCTGCAGCGGTGGTEST: gi|58694575|gb|CK083262.1|CK083262
genomic: AAGTTGCAGGATGGCAGCTTTACAGAACTCCCCAGAAAACTGCTGCTATGgtatgaaact ... cttttgacagGTGAGATGTGTAGCATCGGACCTGGATCGGAAAAGAATCTGCAGCGGTGGT
EST: AAGTTGCAGGATGGCAGCTTTACAGAACTCCCCAGAAAACTGCTGCTATG GTGAGATGTGTAGCATCGGACCTGGATCGGAAAAGAATCTGCAGCGGTGGTEST: gi|88323639|gb|CI556270.1|CI556270
genomic: AAGTTGCAGGATGGCAGCTTTACAGAACTCCCCAGAAAACTGCTGCTATGgtatgaaact ... cttttgacagGTGAGATGTGTAGCATCGGACCTGGATCGGAAAAGAATCTGCAGCGGTGGT
EST: AAGTTGCAGGATGGCAGGTTTACAGAACTCCCCAGAAAACTGCTGGTATG GTGAAATTTGTAGCATCGGACCTGGATCGGAAAAGAATCTGCAGCGGTGGTEST: gi|88537567|gb|CI466525.1|CI466525
genomic: AAGTTGCAGGATGGCAGCTTTACAGAACTCCCCAGAAAACTGCTGCTATGgtatgaaact ... cttttgacagGTGAGATGTGTAGCATCGGACCTGGATCGGAAAAGAATCTGCAGCGGTGGT
EST: AAGTTGCAGGATGGCAGCTTTACAGAACTCCCCAGAAAACTGCTGCTATG GTGAGATGTGTAGCATCGGACCTGGATCGGAAAAGAATGTGCAGCGGTGGTEST: gi|27547319|gb|CA765549.2|CA765549
genomic: AAGTTGCAGGATGGCAGCTTTACAGAACTCCCCAGAAAACTGCTGCTATGgtatgaaact ... cttttgacagGTGAGATGTGTAGCATCGGACCTGGATCGGAAAAGAATCTGCAGCGGTGGT
EST: AAGNTGCAGGATGGCAGCTTTACAGAACTNCCCANAAAACTGCTGCTATG GTGAGATGTGTAGCATCGGACCTGGATCGGAAAANAATCTGCAGCGGNGGTEST: gi|88535510|gb|CI464314.1|CI464314
genomic: AAGTTGCAGGATGGCAGCTTTACAGAACTCCCCAGAAAACTGCTGCTATGgtatgaaact ... cttttgacagGTGAGATGTGTAGCATCGGACCTGGATCGGAAAAGAATCTGCAGCGGTGGT
EST: AAGTTGCAGGATGGCAGCTTTACAGAACTCCCCAGAAAACTGCTGCTATG GTGAGATGTGTAGCATCGGACCTGGATCGGAAAAGAATCTGCAGCGGTGGTEST: gi|22304904|gb|BQ906126.1|BQ906126
genomic: AAGTTGCAGGATGGCAGCTTTACAGAACTCCCCAGAAAACTGCTGCTATGgtatgaaact ... cttttgacagGTGAGATGTGTAGCATCGGACCTGGATCGGAAAAGAATCTGCAGCGGTGGT
EST: AAGTTGCAGGATGGCAGCTTTACAGAACTCCCCAGAAAACTGCTGCTATG GTGAGATGTGTAGCATCGGACCTGGATCGGAAAAGAATCTGCAGCGGTGGTEST: gi|8324548|gb|AU091694.1|AU091694
genomic: AAGTTGCAGGATGGCAGCTTTACAGAACTCCCCAGAAAACTGCTGCTATGgtatgaaact ... cttttgacagGTGAGATGTGTAGCATCGGACCTGGATCGGAAAAGAATCTGCAGCGGTGGT
EST: AAGTTGCAGGATGGCAGCTTTACAGAACTCCCCAGAAAACTGCTGCTATG GTGAGATGTGTAGCATCGGACCTGGATCGGAAAAGAATCTGCAGCGGTGGTEST: gi|88522363|gb|CI450117.1|CI450117
genomic: AAGTTGCAGGATGGCAGCTTTACAGAACTCCCCAGAAAACTGCTGCTATGgtatgaaact ... cttttgacagGTGAGATGTGTAGCATCGGACCTGGATCGGAAAAGAATCTGCAGCGGTGGT
EST: AGTNTGCAGGATGGCAGCGTTACAGAACTCCCCAGAAAACTGCTGCTATG GTGAGATGTGTAGCATCGGACCTGGATCGGAAAAGAATGTGGCAGCGGTGGEST: gi|88845811|gb|CI084541.1|CI084541
genomic: AGT-TGCAGGATGGCAGCTTTACAGAACTCCCCAGAAAACTGCTGCTATGgtatgaaact ... cttttgacagGTGAGATGTGTAGCATCGGACCTGGATCGGAAAAGAATCT-GCAGCGGTGG
EST: AAGTTGCAGGATGGCAGCTTTACAGAACTCCCCAGAAAACTGCTGCTATG GTGAGATGTGTAGCATCGGACCTGGATCGGAAAAGAATCTGCAGCGGTGGTEST: gi|88319523|gb|CI518367.1|CI518367
genomic: AAGTTGCAGGATGGCAGCTTTACAGAACTCCCCAGAAAACTGCTGCTATGgtatgaaact ... cttttgacagGTGAGATGTGTAGCATCGGACCTGGATCGGAAAAGAATCTGCAGCGGTGGT
EST: AAGTTGCAGGATGGCAGCTTTACAGAACTCCCCAGAAAACTGCTGCTATG GTGAGATGTGTAGCATCGGACCTGGATCGGAAAAGAATCTGCAGCGGTGGT
genomic: AAGTTGCAGGATGGCAGCTTTACAGAACTCCCCAGAAAACTGCTGCTATGgtatgaaact ... cttttgacagGTGAGATGTGTAGCATCGGACCTGGATCGGAAAAGAATCTGCAGCGGTGGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTTCCATCGTCCGCAAGAAAGATTCGGGGGTTTCTCAAATACAGGATCAAAAGTTGCAGGATGGCAGCTTTACAGAACTCCCCAGAAAACTGCTGCTATGgtatgaaactgtttctcactatcagttatgtccgtagcatggccttgtgttggcaattgtttacataatcaattatttctcatgccagttcgaaaatata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT