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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGCGAAGAACTTGAAAGATTTGCCATCACCTACTTTGGCCATTGTAGCAGAGCGGTTAAAACTGTCCACTGTACACGAAGgtgtccttgattatcgtgcttcacaaatgtttctgtttttctgaaatgttgtcaacatttgtgtactcatttgatatcactgtcttattgaaatag

Basic information

species Oryza sativa
transcript LOC_Os01g60040.2
intron # 30
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g60040.1 (Oryza sativa), 5'ss of exon 30
lower sequence: GRMZM2G068755_T03 (Zea mays), 5'ss of exon 29
GTTGCGAAGAACTTGAAAGATTTGCCATCACCTACTTTGGCCATTGTAGCAGAGCGGTTAAAACTGTCCACTGTACACGAAGgtgtc--cttgattatcgtgcttcacaaatgtttctgttt----ttctgaaatgttgtcaacatttgtgtactcatttgatatcactgtcttattgaaatag
||||  | ||||||||||||||||||||||||||||||||| |||||| ||||  || | |||||||| |||||||| |||||||    |||    || |||  |   ||     ||| ||     || | |    || | |   ||| || |  |||  | | ||    ||   | ||  |  
GTTGGAAGGAACTTGAAAGATTTGCCATCACCTACTTTGGCTATTGTATCAGAAAGGCTGAAACTGTCTACTGTACATGAAGgtggtgtcttatagattgtgtattgtaatacactctattccatattataaggcatt-ttaggttttctggatccataagttttcttattcacttcgatttc-

upper sequence: LOC_Os01g60040.1 (Oryza sativa), 5'ss of exon 30
lower sequence: GRMZM2G009849_T01 (Zea mays), 5'ss of exon 12
GTTGCGAAGAACTTGAAAGATTTGCCATCACCTACTTTGGCCATTGTAGCAGAGCGGTTAAAACTGTCCACTGTACACGAAGgtgtccttg-at-tatcgtgcttcacaa-atgtttctgtttttctgaaatgttgtcaacatttgtgtactcatttga-tatcactgt-cttattgaaatag
|| |  | |||||||||||||||||||||||||||||||||||||||| ||||  || | |||||||| |||||||| |||||||   ||| || ||| |||  |   ||  |  | |  |     | | |||   |      || | || |  | |   | |  || | | | |||| ||| 
GTGGGAAGGAACTTGAAAGATTTGCCATCACCTACTTTGGCCATTGTATCAGAAAGGCTGAAACTGTCTACTGTACATGAAGgtggtgttgtatatattgtgtattgtaatgtactccattccaaattatatgaaattttgggttttctatttgtatagcttttgctatgcatgttgatata-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88370934|gb|CI595046.1|CI595046
EST:     TACTTTGGCCATTGTAGCAGAGCGGTTAAAACTGTCCACTGTACACGAAG                         GATTTTCTGACTCTGTGAAGATGGTAACAACAAGCATGAGCTTGCCTTCAA
genomic: TACTTTGGCCATTGTAGCAGAGCGGTTAAAACTGTCCACTGTACACGAAGgtgtccttga ... attgaaatagGATTTTCTGACTCTGTGAAGATGGTAACAACAAGCATGAGCTTGCCTTCAA
EST: gi|58686785|gb|CK075472.1|CK075472
EST:     TACTTTGGCCATTGTAGCAGAGCGGTTAAAACTGTCCACTGTACACGAAG                         GATTTTCTGACTCTGTGAAGATGGTAACAACAAGCATGAGCTTGCCTTCAA
genomic: TACTTTGGCCATTGTAGCAGAGCGGTTAAAACTGTCCACTGTACACGAAGgtgtccttga ... attgaaatagGATTTTCTGACTCTGTGAAGATGGTAACAACAAGCATGAGCTTGCCTTCAA