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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTCCTCTGATGGGCTTATACGTTTTTGGGAAAATGAAGgtgagatcttctgcatttgttgtttggtgctcttttgggaaattctgatcttgtgccttttatgtacacgcaagaagcatgccttgtatgtacccatggg...

Basic information

species Oryza sativa
transcript LOC_Os01g39380.1
intron # 30
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g39380.2 (Oryza sativa), 5'ss of exon 29
lower sequence: GRMZM2G074466_T01 (Zea mays), 5'ss of exon 10
GTTCCTCTGATGGGCTTATACGTTTTTGGGAAAATGAAGgtgagatcttctgcatttgttgtttggtgctcttttgggaaattctgatcttgtgccttttatgtacacgcaagaagcatgcctt---gtatgtacccatggg
||||  |||||||||| ||||| ||||||||||||||||||||| ||||  |   ||||    |  |     ||   | | |  || | |||| | |||   |     |    |||  ||  ||   | ||||    |||| 
GTTCAGCTGATGGGCTCATACGATTTTGGGAAAATGAAGgtgagttctta-gtgattgt-aactaatatcaattactgcattgatgtttttgttcatttgggggggggggctaaagtgtggttttctgcatgt-tttatggt
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86504094|gb|CI146727.1|CI146727
EST:     GTTCCTCTGATGGGCTTATACGTTTTTGGGAAAATGAAG                         GAGGAATAAGATGTGTCAAGAACCTTACGCTTCACTCGGCATCTGTTCTGT
genomic: GTTCCTCTGATGGGCTTATACGTTTTTGGGAAAATGAAGgtgagatctt ... tctcttgtagGAGGAATAAGATGTGTCAAGAACCTTACGCTTCACTCGGCATCTGTTCTGT
EST: gi|29628945|gb|CB633956.1|CB633956
EST:     GTTCCTCTGATGGGCTTATACGTTTTTGGGAAAATGAAG                         GAGGAATAAGATGTGTCAAGAACCTTACGCTTCACTCGGCATCTGTTCTGT
genomic: GTTCCTCTGATGGGCTTATACGTTTTTGGGAAAATGAAGgtgagatctt ... tctcttgtagGAGGAATAAGATGTGTCAAGAACCTTACGCTTCACTCGGCATCTGTTCTGT
EST: gi|29641895|gb|CB646902.1|CB646902
EST:     GTTCCTCTGATGGGCTTATACGTTTTTGGGAAAATGAAG                         GAGGAATAAGATGTGTCAAGAACCTTACGCTTCACTCGGCATCTGTTCTGT
genomic: GTTCCTCTGATGGGCTTATACGTTTTTGGGAAAATGAAGgtgagatctt ... tctcttgtagGAGGAATAAGATGTGTCAAGAACCTTACGCTTCACTCGGCATCTGTTCTGT
EST: gi|86257231|gb|CI004049.1|CI004049
EST:     GATGGGCTTATACGTTTTTGGGAAAATGAAG                         GAGGAATAAGATGTGTCAAGAACCTTACGCTTCACTCGGCATCTGTTCTGT
genomic: GATGGGCTTATACGTTTTTGGGAAAATGAAGgtgagatctt ... tctcttgtagGAGGAATAAGATGTGTCAAGAACCTTACGCTTCACTCGGCATCTGTTCTGT
EST: gi|29639658|gb|CB644667.1|CB644667
EST:     GTTCCTCTGATGGGCTTATACGTTTTTGGGAAAATGAAG                         GAGGAATAAGATGTGTCAAGAACCTTACGCTTCACTCGGCATCTGTTCTGT
genomic: GTTCCTCTGATGGGCTTATACGTTTTTGGGAAAATGAAGgtgagatctt ... tctcttgtagGAGGAATAAGATGTGTCAAGAACCTTACGCTTCACTCGGCATCTGTTCTGT
EST: gi|58694575|gb|CK083262.1|CK083262
EST:     GTTCCTCTGATGGGCTTATACGTTTTTGGGAAAATGAAG                         GAGGAATAAGATGTGTCAAGAACCTTACGCTTCACTCGGCATCTGTTCTGT
genomic: GTTCCTCTGATGGGCTTATACGTTTTTGGGAAAATGAAGgtgagatctt ... tctcttgtagGAGGAATAAGATGTGTCAAGAACCTTACGCTTCACTCGGCATCTGTTCTGT
EST: gi|27547319|gb|CA765549.2|CA765549
EST:     GTTCCTCTGATGGGCTTATACGTTTTTGGGAAAATGAAG                         GAGGAATAAGATGTGTCAAGAACCTTACGCTTCACTCGGCATCTGTTCTGT
genomic: GTTCCTCTGATGGGCTTATACGTTTTTGGGAAAATGAAGgtgagatctt ... tctcttgtagGAGGAATAAGATGTGTCAAGAACCTTACGCTTCACTCGGCATCTGTTCTGT
EST: gi|22304904|gb|BQ906126.1|BQ906126
EST:     GTTCCTCTGATGGGCTTATACGTTTTTGGGAAAATGAAG                         GAGGAATAAGATGTGTCAAGAACCTTACGCTTCACTCGGCATCTGTTCTGT
genomic: GTTCCTCTGATGGGCTTATACGTTTTTGGGAAAATGAAGgtgagatctt ... tctcttgtagGAGGAATAAGATGTGTCAAGAACCTTACGCTTCACTCGGCATCTGTTCTGT
EST: gi|325493716|gb|JG458240.1|JG458240
EST:     GTTCCTCTGATGGGCTTATACGTTTATGGGAAAATGAAG                         GAGGAATAAGATGTGTCAAGAACCTTACGCTTCACTCGGCATCTGTTCTGT
genomic: GTTCCTCTGATGGGCTTATACGTTTTTGGGAAAATGAAGgtgagatctt ... tctcttgtagGAGGAATAAGATGTGTCAAGAACCTTACGCTTCACTCGGCATCTGTTCTGT
EST: gi|88845811|gb|CI084541.1|CI084541
EST:     GGGAAAATGAAG                         GAGGAATAAGATGTGTCAAGAACCTTACGCTTCACTCGGCATCTGTTCTGT
genomic: GGGAAAATGAAGgtgagatctt ... tctcttgtagGAGGAATAAGATGTGTCAAGAACCTTACGCTTCACTCGGCATCTGTTCTGT
EST: gi|38476896|gb|CF961029.1|CF961029
EST:     GTTCCTCTGATGGGCTTATACGTTTTTGGGAAAATGAAG                         GAGGAATAAGATGTGTCAAGAACCTTACGCTTCACTCGGCATCTGTTCTGT
genomic: GTTCCTCTGATGGGCTTATACGTTTTTGGGAAAATGAAGgtgagatctt ... tctcttgtagGAGGAATAAGATGTGTCAAGAACCTTACGCTTCACTCGGCATCTGTTCTGT