Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTCGGCGCCGAGCGCGACCACCTCGCCGCCGCCATCGCCTCCGCCGTCAACGTCCGCACACCCGGCGACATCGTCACCATCACCGCCGCCGCCGCCACCGgttcgcgttccacccccatcctcatcgtctccggcgagccaccgtgactgatcacgccatctctctacattgcattgcag

Basic information

species Oryza sativa
transcript LOC_Os12g41140.3
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os12g41140.1 (Oryza sativa), 5'ss of exon 3
lower sequence: GRMZM5G815449_T01 (Zea mays), 5'ss of exon 2
CTCGGCGCCGAGCGCGACCACCTCGCCGCCGCCATCGCCTCCGCCGTCAACGTCCGCACACCCGGCGACATCGTCACCATCACCGCCGCCGCCGCCACCGgttcgcgttccacccccatcctcatc-gtctc-cggcga-gccaccgtgactgatcacgccatctctctacattgcattgcag------
|| |||||||||||||| || || || |||||| | || || ||||||| |||| | || ||  ||||| ||| |||| |||| |||||||||||||| ||||||    ||||  | | ||    | | | | | |||  |  | || |  | |    | | | ||| |    |    ||| |      
CTGGGCGCCGAGCGCGAGCAGCTGGCGGCCGCCGTGGCGTCGGCCGTCAGCGTCAGGACCCCTAGCGACGTCGCCACCGTCACGGCCGCCGCCGCCACAGgttcg-acaccacaacaaaccgagcctgccgcacagcggtgggatcgagcatcagagtgacgtttctgtttggtcttctgccgctgcag