1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
AGGAGTTCAATGTGCTGGAAAACCTCACTTTTGGGTGAATGCTGATGGGACTTACCAAGAGGAAGGACAAAAAACAGTTAAAGGCAAGATTTGGGATAAGgtaattctgggattcatcttgtagttgccctgtaattcgtcagaggaaactaaccaaagttacatatgttctgcattccttggcag
species | Oryza sativa |
transcript | LOC_Os12g40190.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TTACCAAGAGGAAGGACAAAAAACAGTTAAAGGCAAGATTTAGGGATAAG CCTATTGTGAAGCTGCTTAGTCCTGTCCTATCACTGCCAACGCCTAACAAEST: gi|29655973|gb|CB652248.1|CB652248
genomic: TTACCAAGAGGAAGGACAAAAAACAGTTAAAGGCAAGATTT-GGGATAAGgtaattctgg ... tccttggcagCCTATTGTGAAGCTGCTTAGTCCTGTCCTATCACTGCCAACGCCTAACAA
EST: CTTACCAAGAGGAAGGACAAAAAACAGTTAAAGGCAAGATTTGGGATAAG CCTATTGTGAAGCTGCTTAGTCCTGTCCTATCACTGCCAACGCCTAACAAAEST: gi|58687787|gb|CK076474.1|CK076474
genomic: CTTACCAAGAGGAAGGACAAAAAACAGTTAAAGGCAAGATTTGGGATAAGgtaattctgg ... tccttggcagCCTATTGTGAAGCTGCTTAGTCCTGTCCTATCACTGCCAACGCCTAACAAA
EST: CTTACCAAGAGGAAGGACAAAAAACAGTTAAAGGCAAGATTTGGGATAAG CCTATTGTGAAGCTGCTTAGTCCTGTCCTATCACTGCCAATGCCTAACAAA
genomic: CTTACCAAGAGGAAGGACAAAAAACAGTTAAAGGCAAGATTTGGGATAAGgtaattctgg ... tccttggcagCCTATTGTGAAGCTGCTTAGTCCTGTCCTATCACTGCCAACGCCTAACAAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGGAGTTCAATGTGCTGGAAAACCTCACTTTTGGGTGAATGCTGATGGGACTTACCAAGAGGAAGGACAAAAAACAGTTAAAGGCAAGATTTGGGATAAGgtaattctgggattcatcttgtagttgccctgtaattcgtcagaggaaactaaccaaagttacatatgttctgcattccttggcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA