1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
TGTTGATTTGAAGGTCCCAGACTCTTTTGATGAATTCATCTGGGACATGAAGAATAATGATTATGATTTAAGGTCATTTGCTTTTAGGCTGAAGGCAACAgtaagtttctttccctgttttgaagtactgtccatattttctatttctgtccaagcatgtgaattgcaaagtttctcagtaggttatgttggtggtgact...
species | Oryza sativa |
transcript | LOC_Os12g38930.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: AGAATAATGATTATGATTTAAGGTCATTTGCTTTTAGGCTGAAGGCAACA ATGGAGAGCATGGACAGGGAATTGAGAACATCAAGGTTATCAGAGCAGTTAEST: gi|33381845|gb|CF197188.1|CF197188
genomic: AGAATAATGATTATGATTTAAGGTCATTTGCTTTTAGGCTGAAGGCAACAgtaagtttct ... cattacgcagATGGAGAGCATGGACAGGGAATTGAGAACATCAAGGTTATCAGAGCAGTTA
EST: AGAATAATGATTATGATTTAAGGTCATTTGCTTTTAGGCTGAAGGCAACA ATGGAGAGCATGGACAGGGAATTGAGAACATCAAGGTTATCAGAGCAGTTAEST: gi|56157638|gb|C24789.2|C24789
genomic: AGAATAATGATTATGATTTAAGGTCATTTGCTTTTAGGCTGAAGGCAACAgtaagtttct ... cattacgcagATGGAGAGCATGGACAGGGAATTGAGAACATCAAGGTTATCAGAGCAGTTA
EST: AGAATAATGATTATNATTTAAGGTCATTTGCTTTTAGGCTGAAGGCAACA ATGGAGAGCATGGACAGGGAATTGAGAACATCAAGGTTATCAGAGCAGTTA
genomic: AGAATAATGATTATGATTTAAGGTCATTTGCTTTTAGGCTGAAGGCAACAgtaagtttct ... cattacgcagATGGAGAGCATGGACAGGGAATTGAGAACATCAAGGTTATCAGAGCAGTTA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGTTGATTTGAAGGTCCCAGACTCTTTTGATGAATTCATCTGGGACATGAAGAATAATGATTATGATTTAAGGTCATTTGCTTTTAGGCTGAAGGCAACAgtaagtttctttccctgttttgaagtactgtccatattttctatttctgtccaagcatgtgaattgcaaagtttctcagtaggttatgttggtggtgact
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG