1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
ATGTGTGGCAATGGAGTCCGTTGCTTTGCCCGGTTTATAGCTGAGCTTGAAAACCTACAGGGAACACATAGgtaatgtactactcaatatcctttagtaggattacaagaatagtgaacttcaaactatcattgaaaatgcttaaaaaatacctattatcatgatattaat...
species | Oryza sativa |
transcript | LOC_Os12g37960.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TGCTTTGCCCGGTTTATAGCTGAGCTTGAAAACCTACAGGGAACACATAG CTTCAAAATTCACACTGGCGCTGGGCTAATCATTCCTGAAATACAAAATGAEST: gi|29684086|gb|CB680361.1|CB680361
genomic: TGCTTTGCCCGGTTTATAGCTGAGCTTGAAAACCTACAGGGAACACATAGgtaatgtact ... tgcatttcagCTTCAAAATTCACACTGGCGCTGGGCTAATCATTCCTGAAATACAAAATGA
EST: TGCTTTGCCCGGTTTATAGCTGAGCTTGAAAACCTACAGGGAACACATAG CTTCAAAATTCACACTGGCGCTGGGCTAATCATTCCTGAAATACAAAATGAEST: gi|58686153|gb|CK074840.1|CK074840
genomic: TGCTTTGCCCGGTTTATAGCTGAGCTTGAAAACCTACAGGGAACACATAGgtaatgtact ... tgcatttcagCTTCAAAATTCACACTGGCGCTGGGCTAATCATTCCTGAAATACAAAATGA
EST: TGCTTTGCCCGGTTTATAGCTGAGCTTGAAAACCTACAGGGAACACATAG CTTCAAAATTCACACTGGCGCTGGGCTAATCATTCCTGAAATACAAAATGAEST: gi|41882056|gb|BX927725.1|BX927725
genomic: TGCTTTGCCCGGTTTATAGCTGAGCTTGAAAACCTACAGGGAACACATAGgtaatgtact ... tgcatttcagCTTCAAAATTCACACTGGCGCTGGGCTAATCATTCCTGAAATACAAAATGA
EST: TGCTTTGCCCGGTTTATAGCTGAGCTTGAAAACCTACAGGGAACACATAG CTTCAAAATTCACACTGGCGCTGGGCTAATCATTCCTGAAATACAAAATGAEST: gi|33676241|gb|CF304480.1|CF304480
genomic: TGCTTTGCCCGGTTTATAGCTGAGCTTGAAAACCTACAGGGAACACATAGgtaatgtact ... tgcatttcagCTTCAAAATTCACACTGGCGCTGGGCTAATCATTCCTGAAATACAAAATGA
EST: TGCTTTGCCCGGTTTATAGCTGAGCTTGAAAACCTACAGGGAACACATAG CTTCAAAATTCACACTGGCGCTGGGCTAATCATTCCTGAAATACAAAATGAEST: gi|33796423|gb|CF324078.1|CF324078
genomic: TGCTTTGCCCGGTTTATAGCTGAGCTTGAAAACCTACAGGGAACACATAGgtaatgtact ... tgcatttcagCTTCAAAATTCACACTGGCGCTGGGCTAATCATTCCTGAAATACAAAATGA
EST: TGCTTTGCCCGGTTTATAGCTGAGCTTGAAAACCTACAGGGAACACATAG CTTCAAAATTCACACTGGCGCTGGGCTAATCATTCCTGAAATACAAAATGA
genomic: TGCTTTGCCCGGTTTATAGCTGAGCTTGAAAACCTACAGGGAACACATAGgtaatgtact ... tgcatttcagCTTCAAAATTCACACTGGCGCTGGGCTAATCATTCCTGAAATACAAAATGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATGTGTGGCAATGGAGTCCGTTGCTTTGCCCGGTTTATAGCTGAGCTTGAAAACCTACAGGGAACACATAGgtaatgtactactcaatatcctttagtaggattacaagaatagtgaacttcaaactatcattgaaaatgcttaaaaaatacctattatcatgatattaat
- - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaaaat