1 5' 3' | 2 5' 3' | 3 5' 3' |
TGCTGGAAGGGGATGCCAGGAATGTTCTTTGTGAGTCTGTTGAGAGGCATCAGGCGGAGATGTTGGTTGTCGGAAGCCATGGCTATGGAGCAATTAAACGgtattgccatttcctacttttgttcttctgacccctgtttcccacaaagaatttcttcaatttgttgaaaactgctgcctcttcttcatctctgaaaaaa...
species | Oryza sativa |
transcript | LOC_Os12g36640.2 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: CAGGCGGAGATGTTGGTTGTCGGAAGCCATGGCTATGGAGCAATTAAACG AGCTGTTCTTGGAAGCGTGAGTGACTACTGTTCTCATCATGCGCACTGCACEST: gi|88508997|gb|CI436503.1|CI436503
genomic: CAGGCGGAGATGTTGGTTGTCGGAAGCCATGGCTATGGAGCAATTAAACGgtattgccat ... ttccctgcagAGCTGTTCTTGGAAGCGTGAGTGACTACTGTTCTCATCATGCGCACTGCAC
EST: CAGGCGGAGATGTTGGTTGTCGGAAGCCATGGCTATGGAGCAATTAAACG AGCTGTTCTTGGAAGCGTGAGTGACTACTGTTCTCATCATGCGCACTGCACEST: gi|88538240|gb|CI467253.1|CI467253
genomic: CAGGCGGAGATGTTGGTTGTCGGAAGCCATGGCTATGGAGCAATTAAACGgtattgccat ... ttccctgcagAGCTGTTCTTGGAAGCGTGAGTGACTACTGTTCTCATCATGCGCACTGCAC
EST: GCGGAGATGTTGGTTGTCGGAAGCCATGGCTATGGAGCAATTAAACG AGCTGTTCTTGGAAGCGTGAGTGACTACTGTTCTCATCATGCGCACTGCACEST: gi|89168596|gb|CI038448.1|CI038448
genomic: GCGGAGATGTTGGTTGTCGGAAGCCATGGCTATGGAGCAATTAAACGgtattgccat ... ttccctgcagAGCTGTTCTTGGAAGCGTGAGTGACTACTGTTCTCATCATGCGCACTGCAC
EST: CAGGCGGAGATGTTGGTTGTCGGAAGCCATGGCTATGGAGCAATTAAACG AGCTGTTCTTGGAAGCGTGAGTGACTACTGTTCTCATCATGCGCACTGCACEST: gi|86424109|gb|CI062870.1|CI062870
genomic: CAGGCGGAGATGTTGGTTGTCGGAAGCCATGGCTATGGAGCAATTAAACGgtattgccat ... ttccctgcagAGCTGTTCTTGGAAGCGTGAGTGACTACTGTTCTCATCATGCGCACTGCAC
EST: CAGGCGGAGATGTTGGTTGTCGGAAGCCATGGCTATGGAGCAATTAAACG AGCTGTTCTTGGAAGCGTGAGTGACTACTGTTCTCATCATGCGCACTGCACEST: gi|29623326|gb|CB628337.1|CB628337
genomic: CAGGCGGAGATGTTGGTTGTCGGAAGCCATGGCTATGGAGCAATTAAACGgtattgccat ... ttccctgcagAGCTGTTCTTGGAAGCGTGAGTGACTACTGTTCTCATCATGCGCACTGCAC
EST: CAGGCGGAGATGTTGGTTGTCGGAAGCCATGGCTATGGAGCAATTAAACG AGCTGTTCTTGGAAGCGTGAGTGACTACTGTTCTCATCATGCGCACTGCACEST: gi|88480444|gb|CI417715.1|CI417715
genomic: CAGGCGGAGATGTTGGTTGTCGGAAGCCATGGCTATGGAGCAATTAAACGgtattgccat ... ttccctgcagAGCTGTTCTTGGAAGCGTGAGTGACTACTGTTCTCATCATGCGCACTGCAC
EST: CAGGCGGAGATNTTGGTTGTCGGAACCCATGGCTATGGAGCAATTAAACG AGCTGTTCTTGGAAGCGTGAGTGAGTACTGTTCTCATCATGCGCACTGCACEST: gi|88291994|gb|CI532586.1|CI532586
genomic: CAGGCGGAGATGTTGGTTGTCGGAAGCCATGGCTATGGAGCAATTAAACGgtattgccat ... ttccctgcagAGCTGTTCTTGGAAGCGTGAGTGACTACTGTTCTCATCATGCGCACTGCAC
EST: CAGGCGGAGATGTTGGTTGTCGGAAGCCATGGCTATGGAGCAATTAAACG AGCTGTTCTTGGAAGCGTGAGTGACTACTGTTCTCATCATGCGCACTGCACEST: gi|218498665|gb|FG952674.1|FG952674
genomic: CAGGCGGAGATGTTGGTTGTCGGAAGCCATGGCTATGGAGCAATTAAACGgtattgccat ... ttccctgcagAGCTGTTCTTGGAAGCGTGAGTGACTACTGTTCTCATCATGCGCACTGCAC
EST: CAGGCGGAGATGTTGGTTGTCGGAAGCCATGGCTATGGAGCAATTAAACG AGCTGTTCTTGGAAGCGTGAGTGACTACTGTTCTCATCATGCGCACTGCACEST: gi|58031113|gb|CX728656.1|CX728656
genomic: CAGGCGGAGATGTTGGTTGTCGGAAGCCATGGCTATGGAGCAATTAAACGgtattgccat ... ttccctgcagAGCTGTTCTTGGAAGCGTGAGTGACTACTGTTCTCATCATGCGCACTGCAC
EST: CAGGCGGAGATGTTGGTTGTCGGAAGCCATGGCTATGGAGCAATTAAACG AGCTGTTCTTGGAAGCGTGAGTGACTACTGTTCTCATCATGCGCACTGCACEST: gi|88477005|gb|CI414276.1|CI414276
genomic: CAGGCGGAGATGTTGGTTGTCGGAAGCCATGGCTATGGAGCAATTAAACGgtattgccat ... ttccctgcagAGCTGTTCTTGGAAGCGTGAGTGACTACTGTTCTCATCATGCGCACTGCAC
EST: CAGGCGGAGATGTTGGTTGTCGGAAGCCATGGCTATGGAGCAATTAAACG AGCTGTTCTTGGAAGCGTGAGTGACTACTGTTCTCATCATGCGCACTGCACEST: gi|8860142|gb|AU097460.1|AU097460
genomic: CAGGCGGAGATGTTGGTTGTCGGAAGCCATGGCTATGGAGCAATTAAACGgtattgccat ... ttccctgcagAGCTGTTCTTGGAAGCGTGAGTGACTACTGTTCTCATCATGCGCACTGCAC
EST: CAGGCGGAGATGTTGGTTGTCGGAAGCCATGGCTATGGAGCAATTAAACG AGCTGTTCTTGGAAGCGTGAGTGACTACTGTTCTCATCATGCGCACTGCACEST: gi|88293088|gb|CI512853.1|CI512853
genomic: CAGGCGGAGATGTTGGTTGTCGGAAGCCATGGCTATGGAGCAATTAAACGgtattgccat ... ttccctgcagAGCTGTTCTTGGAAGCGTGAGTGACTACTGTTCTCATCATGCGCACTGCAC
EST: TGGTTTTCGGAAGCCATGGCTATGGAGCAATTAAACG AGCTGTTCTTGGAAGCGTGAGTGACTACTNTTCTCATCATGCGCACTGCACEST: gi|218783373|gb|GE329425.1|GE329425
genomic: TGGTTGTCGGAAGCCATGGCTATGGAGCAATTAAACGgtattgccat ... ttccctgcagAGCTGTTCTTGGAAGCGTGAGTGACTACTGTTCTCATCATGCGCACTGCAC
EST: CAGGCGGAGATGTTGGTTGTCGGAAGCCATGGCTATGGAGCAATTAAACG AGCTGTTCTTGGAAGCGTGAGTGACTACTGTTCTCATCATGCGCACTGCACEST: gi|94362829|gb|CI052990.1|CI052990
genomic: CAGGCGGAGATGTTGGTTGTCGGAAGCCATGGCTATGGAGCAATTAAACGgtattgccat ... ttccctgcagAGCTGTTCTTGGAAGCGTGAGTGACTACTGTTCTCATCATGCGCACTGCAC
EST: CAGGCGGAGATGTTGGTTGTCGGAAGCCATGGCTATGGAGCAATTAAACG AGCTGTTCTTGGAAGCGTGAGTGACTACTGTTCTCATCATGCGCACTGCACEST: gi|88324041|gb|CI561450.1|CI561450
genomic: CAGGCGGAGATGTTGGTTGTCGGAAGCCATGGCTATGGAGCAATTAAACGgtattgccat ... ttccctgcagAGCTGTTCTTGGAAGCGTGAGTGACTACTGTTCTCATCATGCGCACTGCAC
EST: TGTTGGTTGTCGGAAGCCATGGCTATGGAGCAATTAAACG AGCTGTTCTTGGAAGCGTGAGTGAGTACTGTTCTCATCATGCGCACTGCACEST: gi|29686559|gb|CB682834.1|CB682834
genomic: TGTTGGTTGTCGGAAGCCATGGCTATGGAGCAATTAAACGgtattgccat ... ttccctgcagAGCTGTTCTTGGAAGCGTGAGTGACTACTGTTCTCATCATGCGCACTGCAC
EST: CAGGCGGAGATGTTGGTTGTCGGAAGCCATGGCTATGGAGCAATTAAACG AGCTGTTCTTGGAAGCGTGAGTGACTACTGTTCTCATCATGCGCACTGCAC
genomic: CAGGCGGAGATGTTGGTTGTCGGAAGCCATGGCTATGGAGCAATTAAACGgtattgccat ... ttccctgcagAGCTGTTCTTGGAAGCGTGAGTGACTACTGTTCTCATCATGCGCACTGCAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGCTGGAAGGGGATGCCAGGAATGTTCTTTGTGAGTCTGTTGAGAGGCATCAGGCGGAGATGTTGGTTGTCGGAAGCCATGGCTATGGAGCAATTAAACGgtattgccatttcctacttttgttcttctgacccctgtttcccacaaagaatttcttcaatttgttgaaaactgctgcctcttcttcatctctgaaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA