1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
ACTCAAAATAGAGGGGCAGCATCTTCTGCTTCAGCATCTATGCGGAAGGCATCATCAACAACAAATATTGCAGATGACCTATCTGCAATATTTGGAGGAGgtacggatcaacccaaatgcagcagttctgaacatacaaggttttgcaatattattggctatcgctataactcatttggttgatttcttttcttttag
species | Oryza sativa |
transcript | LOC_Os12g36180.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: ATCATCAACAACAAATATTGCAGATGACCTATCTGCAATATTTGGAGGAG CTCCCACATCATCTGAATAATTTCAAGAAATTGAAGGAGAGAGTGAAGAAAEST: gi|58601859|gb|CK012387.1|CK012387
genomic: ATCATCAACAACAAATATTGCAGATGACCTATCTGCAATATTTGGAGGAGgtacggatca ... tttcttttagCTCCCACATCATCTGAAGAATTTCAAGAAATTGAAGGAGAGAGTGAAGAAA
EST: ATCATCAACAACAAATATTGCAGATGATCTATCTGCAATATTTGGAGGAG CTCCCACATCATCTGAAGAATTTCAAGAAATTGAAGGAGAGAGTGAAGAAAEST: gi|29669274|gb|CB665549.1|CB665549
genomic: ATCATCAACAACAAATATTGCAGATGACCTATCTGCAATATTTGGAGGAGgtacggatca ... tttcttttagCTCCCACATCATCTGAAGAATTTCAAGAAATTGAAGGAGAGAGTGAAGAAA
EST: ATCATCAACAACAAATATTGCAGATGACCTATCTGCAATATTTGGAGGAG CTCCCACATCATCTGAAGAATTTCAAGAAATTGAAGGAGAGAGTGAAGAAAEST: gi|58678718|gb|CK067405.1|CK067405
genomic: ATCATCAACAACAAATATTGCAGATGACCTATCTGCAATATTTGGAGGAGgtacggatca ... tttcttttagCTCCCACATCATCTGAAGAATTTCAAGAAATTGAAGGAGAGAGTGAAGAAA
EST: ATCATCAACAACAAATATTGCAGATGACCTATCTGCAATATTTGGAGGAG CTCCCACATCATCTGAAGAATTTCAAGAAATTGAAGGAGAGAGTGAAGAAA
genomic: ATCATCAACAACAAATATTGCAGATGACCTATCTGCAATATTTGGAGGAGgtacggatca ... tttcttttagCTCCCACATCATCTGAAGAATTTCAAGAAATTGAAGGAGAGAGTGAAGAAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACTCAAAATAGAGGGGCAGCATCTTCTGCTTCAGCATCTATGCGGAAGGCATCATCAACAACAAATATTGCAGATGACCTATCTGCAATATTTGGAGGAGgtacggatcaacccaaatgcagcagttctgaacatacaaggttttgcaatattattggctatcgctataactcatttggttgatttcttttcttttag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG