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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTCACTCAGAACGAGTTGATCTCAAAGTGGGAAACACTCACTGGGAAAAGTCTTGAGAAATTCCACATACCTGGTGATGAATTTTTGGCTTCTATGAAAGgtacctggtcaaactagaatatgtgtttggctttttactgttttcgatgtacaattttgacaacaatttctattataaaaggtttataaaaatctaataa...

Basic information

species Oryza sativa
transcript LOC_Os12g16410.1
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|8857032|gb|AU094350.1|AU094350
EST:     TCTTGAGAAATTCCACATACCTGGTGATGAATTTTTGGCTTCTATGAAAG                         ATTTGGATTTTGCTAGTCAAGTAGGAATAGGACATTATTACCACATCTTTT
genomic: TCTTGAGAAATTCCACATACCTGGTGATGAATTTTTGGCTTCTATGAAAGgtacctggtc ... atgtgtgcagATTTGGATTTTGCTAGTCAAGTAGGAATAGGACATTATTACCACATCTTTT
EST: gi|88466265|gb|CI529674.1|CI529674
EST:     TCTTGAGAAATTCCACATACCTGGTGATGAATTTTTGGCTTCTATGAAAG                         ATTTGGATTTTGCTAGTCAAGTAGGAATAGGACATTATTACCACATCTTTT
genomic: TCTTGAGAAATTCCACATACCTGGTGATGAATTTTTGGCTTCTATGAAAGgtacctggtc ... atgtgtgcagATTTGGATTTTGCTAGTCAAGTAGGAATAGGACATTATTACCACATCTTTT
EST: gi|88278294|gb|CI399294.1|CI399294
EST:     GGCTTCTATGAAAG                         ATTTGGATTTTGCTAGTCAAGTAGGAATAGGACATTATTACCACATCTTTT
genomic: GGCTTCTATGAAAGgtacctggtc ... atgtgtgcagATTTGGATTTTGCTAGTCAAGTAGGAATAGGACATTATTACCACATCTTTT
EST: gi|88955813|gb|CI092102.1|CI092102
EST:     TCTTGAGAAATTCCACATACCTGGTGATGAATTTTTGGCTTCTATGAAAG                         ATTTGGATTTTGCTAGTCAAGTAGGAATAGGACATTATTACCACATCTTTT
genomic: TCTTGAGAAATTCCACATACCTGGTGATGAATTTTTGGCTTCTATGAAAGgtacctggtc ... atgtgtgcagATTTGGATTTTGCTAGTCAAGTAGGAATAGGACATTATTACCACATCTTTT
EST: gi|89183493|gb|CI046058.1|CI046058
EST:     TCTTGAGAAATTCCACATACCTGGTGATGAATTTTTGGCTTCTATGAAAG                         ATTTGGATTTTGCTAGTCAAGTAGGAATAGGACATTATTACCACATCTTTT
genomic: TCTTGAGAAATTCCACATACCTGGTGATGAATTTTTGGCTTCTATGAAAGgtacctggtc ... atgtgtgcagATTTGGATTTTGCTAGTCAAGTAGGAATAGGACATTATTACCACATCTTTT
EST: gi|109712537|gb|CI105145.1|CI105145
EST:     TCTTGAGAAATTCCACATACCTGGTGATGAATTTTTGGCTTCTATGAAAG                         ATTTGGATTTTGCTAGTCAAGTAGGAATAGGACATTATTACCACATCTTTT
genomic: TCTTGAGAAATTCCACATACCTGGTGATGAATTTTTGGCTTCTATGAAAGgtacctggtc ... atgtgtgcagATTTGGATTTTGCTAGTCAAGTAGGAATAGGACATTATTACCACATCTTTT
EST: gi|89164816|gb|CI101904.1|CI101904
EST:     TCTTGAGAAATTCCACATACCTGGTGATGAATTTTTGGCTTCTATGAAAG                         ATTTGGATTTTGCTAGTCAAGTAGGAATAGGACATTATTACCACATCTTTT
genomic: TCTTGAGAAATTCCACATACCTGGTGATGAATTTTTGGCTTCTATGAAAGgtacctggtc ... atgtgtgcagATTTGGATTTTGCTAGTCAAGTAGGAATAGGACATTATTACCACATCTTTT
EST: gi|88833044|gb|CI369934.1|CI369934
EST:     TCTTGAGAAATTCCACATACCTGGTGATGAATTTTTGGCTTCTATGAAAG                         ATTTGGATTTTGCTAGTCAAGTAGGAATAGGACATTATTACCACATCTTTT
genomic: TCTTGAGAAATTCCACATACCTGGTGATGAATTTTTGGCTTCTATGAAAGgtacctggtc ... atgtgtgcagATTTGGATTTTGCTAGTCAAGTAGGAATAGGACATTATTACCACATCTTTT
EST: gi|87031600|gb|CI263973.1|CI263973
EST:     TCTTGAGAAATTCCACATACCTGGTGATGAATTTTTGGCTTCTATGAAAG                         ATTTGGATTTTGCTAGTCAAGTAGGAATAGGACATTATTACCACATCTTTT
genomic: TCTTGAGAAATTCCACATACCTGGTGATGAATTTTTGGCTTCTATGAAAGgtacctggtc ... atgtgtgcagATTTGGATTTTGCTAGTCAAGTAGGAATAGGACATTATTACCACATCTTTT
EST: gi|86598047|gb|CI278437.1|CI278437
EST:     TACCTGGTGATGAATTTTTGGCTTCTATGAAAG                         ATTTGGATTTTGCTAGTCAAGTAGGAATAGGACATTATTACCACATCTTTT
genomic: TACCTGGTGATGAATTTTTGGCTTCTATGAAAGgtacctggtc ... atgtgtgcagATTTGGATTTTGCTAGTCAAGTAGGAATAGGACATTATTACCACATCTTTT
EST: gi|88972885|gb|CI019504.1|CI019504
EST:     TCTTGAGAAATTCCACATACCTGGTGATGAATTTTTGGCTTCTATGAAAG                         ATTTGGATTTTGCTAGTCAAGTAGGAATAGGACATTATTACCACATCTTTT
genomic: TCTTGAGAAATTCCACATACCTGGTGATGAATTTTTGGCTTCTATGAAAGgtacctggtc ... atgtgtgcagATTTGGATTTTGCTAGTCAAGTAGGAATAGGACATTATTACCACATCTTTT
EST: gi|86877406|gb|CI312768.1|CI312768
EST:     TCTTGAGAAATTCCACATACCTGGTGATGAATTTTTGGCTTCTATGAAAG                         ATTTGGATTTTGCTAGTCAAGTAGGAATAGGACATTATTACCACATCTTTT
genomic: TCTTGAGAAATTCCACATACCTGGTGATGAATTTTTGGCTTCTATGAAAGgtacctggtc ... atgtgtgcagATTTGGATTTTGCTAGTCAAGTAGGAATAGGACATTATTACCACATCTTTT
EST: gi|88991983|gb|CI035121.1|CI035121
EST:     TCTTGAGAAATTCCACATACCTGGTGATGAATTTTTGGCTTCTATGAAAG                         ATTTGGATTTTGCTAGTCAAGTAGGAATAGGACATTATTACCACATCTTTT
genomic: TCTTGAGAAATTCCACATACCTGGTGATGAATTTTTGGCTTCTATGAAAGgtacctggtc ... atgtgtgcagATTTGGATTTTGCTAGTCAAGTAGGAATAGGACATTATTACCACATCTTTT
EST: gi|88220624|gb|CI220184.1|CI220184
EST:     TCTTGAGAAATTCCACATACCTGGTGATGAATTTTTGGCTTCTATGAAAG                         ATTTGGATTTTGCTAGTCAAGTAGGAATAGGACATTATTACCACATCTTTT
genomic: TCTTGAGAAATTCCACATACCTGGTGATGAATTTTTGGCTTCTATGAAAGgtacctggtc ... atgtgtgcagATTTGGATTTTGCTAGTCAAGTAGGAATAGGACATTATTACCACATCTTTT
EST: gi|88203795|gb|CI203644.1|CI203644
EST:     TCTTGAGAAATTCCACATACCTGGTGATGAATTTTTGGCTTCTATGAAAG                         ATTTGGATTTTGCTAGTCAAGTAGGAATAGGACATTATTACCACATCTTTT
genomic: TCTTGAGAAATTCCACATACCTGGTGATGAATTTTTGGCTTCTATGAAAGgtacctggtc ... atgtgtgcagATTTGGATTTTGCTAGTCAAGTAGGAATAGGACATTATTACCACATCTTTT
EST: gi|88991457|gb|CI034792.1|CI034792
EST:     TCTTGAGAAATTCCACATACCTGGTGATGAATTTTTGGCTTCTATGAAAG                         ATTTGGATTTTGCTAGTCAAGTAGGAATAGGACATTATTACCACATCTTTT
genomic: TCTTGAGAAATTCCACATACCTGGTGATGAATTTTTGGCTTCTATGAAAGgtacctggtc ... atgtgtgcagATTTGGATTTTGCTAGTCAAGTAGGAATAGGACATTATTACCACATCTTTT
EST: gi|86833398|gb|CI336187.1|CI336187
EST:     CTGGTGATGAATTTTTGGCTTCTATGAAAG                         ATTTGGATTTTGCTAGTCAAGTAGGAATAGGACATTATTACCACATCTTTT
genomic: CTGGTGATGAATTTTTGGCTTCTATGAAAGgtacctggtc ... atgtgtgcagATTTGGATTTTGCTAGTCAAGTAGGAATAGGACATTATTACCACATCTTTT
EST: gi|89163048|gb|CI099938.1|CI099938
EST:     TCTTGAGAAATTCCACATACCTGGTGATGAATTTTTGGCTTCTATGAAAG                         ATTTGGATTGTGCTAGTCAAGTAGGAATAGGACATTATTACCACATCTTTT
genomic: TCTTGAGAAATTCCACATACCTGGTGATGAATTTTTGGCTTCTATGAAAGgtacctggtc ... atgtgtgcagATTTGGATTTTGCTAGTCAAGTAGGAATAGGACATTATTACCACATCTTTT
EST: gi|88260123|gb|CI361624.1|CI361624
EST:     TCTTGAGAAATTCCACATACCTGGTGATGAATTTTTGGCTTCTATGAAAG                         ATTTGGATTTTGCTAGTCAAGTAGGAATAGGACATTATTACCACATCTTTT
genomic: TCTTGAGAAATTCCACATACCTGGTGATGAATTTTTGGCTTCTATGAAAGgtacctggtc ... atgtgtgcagATTTGGATTTTGCTAGTCAAGTAGGAATAGGACATTATTACCACATCTTTT