1 5' 3' | 2 5' 3' | 3 5' 3' |
CTCACTCATAACGAGCTGATCGCAATGTGGGAAAAACTCTCTGGAAAAAGTCTTACGAAATTCCACATACCTGCTGAAGAATTTTTGGCTCCAATGAAAGgtaaaaataaactgcttaccgatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatacacacacatctaat...
species | Oryza sativa |
transcript | LOC_Os12g16220.2 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TCTTACGAAATCCCACATACCTGCTGAAGAATTTTTGGCTCCAATGAAAG ATATGCAATTTGCTTTTCAAGTGGGAATAACACATTTCTACCACATTTTCTEST: gi|88470882|gb|CI408153.1|CI408153
genomic: TCTTACGAAATTCCACATACCTGCTGAAGAATTTTTGGCTCCAATGAAAGgtaaaaataa ... atgcaagcagATATGCAATTTGCTTTTCAAGTGGGAATAACACATTTCTACCACATTTTCT
EST: TCTTACGAAATTCCACATACCTGCTGAAGAATTTTTGGCTCCAATGAAAG ATATGCAATTTGCTTTTCAAGTGGGAATAACACATTTCTACCACATTTTCTEST: gi|88515840|gb|CI443494.1|CI443494
genomic: TCTTACGAAATTCCACATACCTGCTGAAGAATTTTTGGCTCCAATGAAAGgtaaaaataa ... atgcaagcagATATGCAATTTGCTTTTCAAGTGGGAATAACACATTTCTACCACATTTTCT
EST: TCTTACGAAATTCCACATACCTGCTGAAGAATTTTTGGCTCCAATGAAAG ATATGCAATTTGCTTTTCAAGTGGGAATAACACATTTCTACCACATTTTCTEST: gi|88547420|gb|CI477710.1|CI477710
genomic: TCTTACGAAATTCCACATACCTGCTGAAGAATTTTTGGCTCCAATGAAAGgtaaaaataa ... atgcaagcagATATGCAATTTGCTTTTCAAGTGGGAATAACACATTTCTACCACATTTTCT
EST: TCTTACGAAATTCCACATACCTGCTGAAGAATTTTTGGCTCCAATGAAAG ATATGCAATTTGCTTTTCAAGTGGGAATAACACATTTCTACCACATTTTGTEST: gi|88532962|gb|CI462297.1|CI462297
genomic: TCTTACGAAATTCCACATACCTGCTGAAGAATTTTTGGCTCCAATGAAAGgtaaaaataa ... atgcaagcagATATGCAATTTGCTTTTCAAGTGGGAATAACACATTTCTACCACATTTTCT
EST: TCTTACGAAATTCCACATACCTGCTGAAGAATTTTTGGCTCCAATGAAAG ATATGCAATTTGCTTTTCAAGTGGGAATAACACATTTCTACCACATTTTCTEST: gi|4716392|gb|AU057508.1|AU057508
genomic: TCTTACGAAATTCCACATACCTGCTGAAGAATTTTTGGCTCCAATGAAAGgtaaaaataa ... atgcaagcagATATGCAATTTGCTTTTCAAGTGGGAATAACACATTTCTACCACATTTTCT
EST: TCTTACGAAATTCCACATACCTGCTGAAGAATTTTTGGCTCCAATGAAAG ATATGCAATTTGCTTTTCAAGTGGGAATAACACATTTCTACCACATTTTCTEST: gi|88484916|gb|CI422187.1|CI422187
genomic: TCTTACGAAATTCCACATACCTGCTGAAGAATTTTTGGCTCCAATGAAAGgtaaaaataa ... atgcaagcagATATGCAATTTGCTTTTCAAGTGGGAATAACACATTTCTACCACATTTTCT
EST: TCTTACGAAATTCCACATACCTGCTGAAGAATTTTTGGCTCCAATGAAAG ATATGCAATTTGCTTTTCAAGTGGGAATAACACATTTCTACCACATTTTCTEST: gi|25804366|gb|CA760327.1|CA760327
genomic: TCTTACGAAATTCCACATACCTGCTGAAGAATTTTTGGCTCCAATGAAAGgtaaaaataa ... atgcaagcagATATGCAATTTGCTTTTCAAGTGGGAATAACACATTTCTACCACATTTTCT
EST: TCTTACGAAATTCCACATACCTGCTGAAGAATTTTTGGCTCCAATGAAAG ATATGCAATTTGCTTTTCAAGTGGGAATAACACATTTCTACCATATTTTCTEST: gi|88295031|gb|CI522985.1|CI522985
genomic: TCTTACGAAATTCCACATACCTGCTGAAGAATTTTTGGCTCCAATGAAAGgtaaaaataa ... atgcaagcagATATGCAATTTGCTTTTCAAGTGGGAATAACACATTTCTACCACATTTTCT
EST: TCTTACGAAATTCCACATACCTGCTGAAGAATTTTTGGCTCCAATGAAAG ATATGCAATTTGCTTTTCAAGTGGGAATAACACATTTCTACCACATTTTCTEST: gi|88555668|gb|CI485944.1|CI485944
genomic: TCTTACGAAATTCCACATACCTGCTGAAGAATTTTTGGCTCCAATGAAAGgtaaaaataa ... atgcaagcagATATGCAATTTGCTTTTCAAGTGGGAATAACACATTTCTACCACATTTTCT
EST: TCTTACGAAATTCCACATACCTGCTGAAGAATTTTTGGCTCCAATGAAAG ATATGCAATTTGCTTTTCAAGTGGGAATAACACATTTCTACCACATTTTCTEST: gi|88552997|gb|CI483062.1|CI483062
genomic: TCTTACGAAATTCCACATACCTGCTGAAGAATTTTTGGCTCCAATGAAAGgtaaaaataa ... atgcaagcagATATGCAATTTGCTTTTCAAGTGGGAATAACACATTTCTACCACATTTTCT
EST: TCTTACGAAATTCCACATACCTGCTGAAGAATTTTTGGCTCCAATGAAAG ATATGCAATTTGCTTTTCAAGTGGGAATAACACATTTCTACCACATTTTCTEST: gi|88528983|gb|CI457271.1|CI457271
genomic: TCTTACGAAATTCCACATACCTGCTGAAGAATTTTTGGCTCCAATGAAAGgtaaaaataa ... atgcaagcagATATGCAATTTGCTTTTCAAGTGGGAATAACACATTTCTACCACATTTTCT
EST: TCTTACGAAATTCCACATACCTGCTGAAGAATTTTTGGCTCCAATGAAAG ATATGCAATTTGCTTTTCAAGTGGGAATAACACATTTCTACCACATTTTCTEST: gi|88542998|gb|CI472362.1|CI472362
genomic: TCTTACGAAATTCCACATACCTGCTGAAGAATTTTTGGCTCCAATGAAAGgtaaaaataa ... atgcaagcagATATGCAATTTGCTTTTCAAGTGGGAATAACACATTTCTACCACATTTTCT
EST: TCTTACGAAATTCCACATACCTGCTGAAGAATTTTTGGCTCCAATGAAAG ATATGCAATTTGCTTTTCAAGTGGGAATAACACATTTCTACCACATTTTCTEST: gi|88520930|gb|CI448584.1|CI448584
genomic: TCTTACGAAATTCCACATACCTGCTGAAGAATTTTTGGCTCCAATGAAAGgtaaaaataa ... atgcaagcagATATGCAATTTGCTTTTCAAGTGGGAATAACACATTTCTACCACATTTTCT
EST: TCTTACGAAATTCCACATACCTGCTGAAGAATTTTTGGCTCCAATGAAAG ATATGCAATTTGCTTTTCAAGTGGGAATAACACATTTCTACCACATTTTCTEST: gi|88503627|gb|CI431133.1|CI431133
genomic: TCTTACGAAATTCCACATACCTGCTGAAGAATTTTTGGCTCCAATGAAAGgtaaaaataa ... atgcaagcagATATGCAATTTGCTTTTCAAGTGGGAATAACACATTTCTACCACATTTTCT
EST: CTGCTGAAGAATTTTTGGCTCCAATGAAAG ATATGCAATTTGCTTTTCAAGTGGGAATAACACATTTCTACCACATTTTTTEST: gi|15854562|gb|BI807374.1|BI807374
genomic: CTGCTGAAGAATTTTTGGCTCCAATGAAAGgtaaaaataa ... atgcaagcagATATGCAATTTGCTTTTCAAGTGGGAATAACACATTTCTACCACATTTTCT
EST: TCTTACGAAATTCCACATACCTGCTGAAGAATTTTTGGCTCCCATGAAAG ATATGCCATTTGCTTTTCAAGTGGGAATAACACATTTCTACCACATTTTCTEST: gi|88549860|gb|CI479786.1|CI479786
genomic: TCTTACGAAATTCCACATACCTGCTGAAGAATTTTTGGCTCCAATGAAAGgtaaaaataa ... atgcaagcagATATGCAATTTGCTTTTCAAGTGGGAATAACACATTTCTACCACATTTTCT
EST: TCTTACGAAATTCCACATACCTGCTGAAGAATTTTTGGCTCCAATGAAAG ATATGCAATTTGCTTTTCAAGTGGGAATAACACATTTCTACCACATTTTCTEST: gi|55410765|gb|CV723141.1|CV723141
genomic: TCTTACGAAATTCCACATACCTGCTGAAGAATTTTTGGCTCCAATGAAAGgtaaaaataa ... atgcaagcagATATGCAATTTGCTTTTCAAGTGGGAATAACACATTTCTACCACATTTTCT
EST: TCTTACGAAATTCCACATACCTGCTGAAGAATTTTTGGCTCCAATGAAAG ATATGCAATTTGCTTTTCAAGTGGGAATAACACATTTCTACCACATTTTCTEST: gi|702642|gb|D48933.1|D48933
genomic: TCTTACGAAATTCCACATACCTGCTGAAGAATTTTTGGCTCCAATGAAAGgtaaaaataa ... atgcaagcagATATGCAATTTGCTTTTCAAGTGGGAATAACACATTTCTACCACATTTTCT
EST: TCTTACGAAATTCCACATACCTGCTGAAGAATTTTTGGCTCCAATGAAAG ATATGCAATTTGCTTTTCAAGTGGGGATAACACATTTCTACCACATTTTCTEST: gi|88546924|gb|CI477184.1|CI477184
genomic: TCTTACGAAATTCCACATACCTGCTGAAGAATTTTTGGCTCCAATGAAAGgtaaaaataa ... atgcaagcagATATGCAATTTGCTTTTCAAGTGGGAATAACACATTTCTACCACATTTTCT
EST: TCTTACGAAATTCCACATACCTGCTGAAGAATTTTTGGCTCCAATGAAAG ATATGCAATTTGCTTTTCAAGTGGGAATAACACATTTCTACCACATTTTCTEST: gi|29660599|gb|CB656874.1|CB656874
genomic: TCTTACGAAATTCCACATACCTGCTGAAGAATTTTTGGCTCCAATGAAAGgtaaaaataa ... atgcaagcagATATGCAATTTGCTTTTCAAGTGGGAATAACACATTTCTACCACATTTTCT
EST: TCTTACGAAATTCCACATACCTGCTGAAGAATTTTTGGCTCCAATGAAAG ATATGCAATTTGCTTTTCAAGTGGGAATAACACATTTCTTCCACATTTTGTEST: gi|86895324|gb|CI331241.1|CI331241
genomic: TCTTACGAAATTCCACATACCTGCTGAAGAATTTTTGGCTCCAATGAAAGgtaaaaataa ... atgcaagcagATATGCAATTTGCTTTTCAAGTGGGAATAACACATTTCTACCACATTTTCT
EST: TCTTACGAAATTCCACATACCTGCTGAAGAATTTTTGGCTCCAATGAAAG ATATGCAATTTGCTTTTCAAGTGGGAATAACACATTTCTACCACATTTTCTEST: gi|89197834|gb|CI013824.1|CI013824
genomic: TCTTACGAAATTCCACATACCTGCTGAAGAATTTTTGGCTCCAATGAAAGgtaaaaataa ... atgcaagcagATATGCAATTTGCTTTTCAAGTGGGAATAACACATTTCTACCACATTTTCT
EST: TCTTACGAAATTCCACATACCTGCTGAAGAATTTTTGGCTCCAATGAAAG ATATGCAATTTGCTTTTCAAGTGGGAATAACACATTTCTACCACATTTTCTEST: gi|88478471|gb|CI415742.1|CI415742
genomic: TCTTACGAAATTCCACATACCTGCTGAAGAATTTTTGGCTCCAATGAAAGgtaaaaataa ... atgcaagcagATATGCAATTTGCTTTTCAAGTGGGAATAACACATTTCTACCACATTTTCT
EST: TCTTACGAAATTCCACATACCTGCTGAAGAATTTTTGGCTCCAATGAAAG ATATGCAATTTGCTTTTCAAGTGGGAATAACACATTTCTACCACATTTTCTEST: gi|88522294|gb|CI450041.1|CI450041
genomic: TCTTACGAAATTCCACATACCTGCTGAAGAATTTTTGGCTCCAATGAAAGgtaaaaataa ... atgcaagcagATATGCAATTTGCTTTTCAAGTGGGAATAACACATTTCTACCACATTTTCT
EST: TCTTACGAAATTCCACATACCTGCTGAAGAATTTTTGGCTCCAATGAAAG ATATGCAATTTGCTTTTCAAGTGGGAATAACACATTTCTACCACATTTTCTEST: gi|9866068|gb|AU101818.1|AU101818
genomic: TCTTACGAAATTCCACATACCTGCTGAAGAATTTTTGGCTCCAATGAAAGgtaaaaataa ... atgcaagcagATATGCAATTTGCTTTTCAAGTGGGAATAACACATTTCTACCACATTTTCT
EST: TCTTACGAAATTCCACATACCTGCTGAAGAATTTTTGGCTCCAATGAAAG ATATGCAATTTGCTTTTCAAGTGGGAATAACACATTTCTACCACATTTTCTEST: gi|88486771|gb|CI424042.1|CI424042
genomic: TCTTACGAAATTCCACATACCTGCTGAAGAATTTTTGGCTCCAATGAAAGgtaaaaataa ... atgcaagcagATATGCAATTTGCTTTTCAAGTGGGAATAACACATTTCTACCACATTTTCT
EST: TCTTACGAAATTCCACATACCTGCTGAAGAATTTTTGGCTCCAATGAAAG ATATGCAATTTGCTTTTCAAGTGGGAATAACACATTTCTACCACATTTTCTEST: gi|88469147|gb|CI406418.1|CI406418
genomic: TCTTACGAAATTCCACATACCTGCTGAAGAATTTTTGGCTCCAATGAAAGgtaaaaataa ... atgcaagcagATATGCAATTTGCTTTTCAAGTGGGAATAACACATTTCTACCACATTTTCT
EST: TCTTACGAAATTCCACATACCTGCTGAAGAATTTTTGGCTCCAATGAAAG ATATGCAATTTGCTTTTCAAGTGGGAATAACACATTTCTACCACATTTTCTEST: gi|33665681|gb|CF296648.1|CF296648
genomic: TCTTACGAAATTCCACATACCTGCTGAAGAATTTTTGGCTCCAATGAAAGgtaaaaataa ... atgcaagcagATATGCAATTTGCTTTTCAAGTGGGAATAACACATTTCTACCACATTTTCT
EST: CCACATACCTGCTGAAGAATTTTTGGCTCCAATGAAAG ATATGCAATTTGCTTTTCAAGTGGGAATAACACATTTCTACCACATTTTCTEST: gi|88554679|gb|CI484872.1|CI484872
genomic: CCACATACCTGCTGAAGAATTTTTGGCTCCAATGAAAGgtaaaaataa ... atgcaagcagATATGCAATTTGCTTTTCAAGTGGGAATAACACATTTCTACCACATTTTCT
EST: TCTTACGAAATTCCACATACCTGCTGAAGAATTTTTGGCTCCAATGAAAG ATATGCAATTTGCTTTTCAAGTGGGAATAACACATTTCTACCACATTTTCTEST: gi|88525405|gb|CI453408.1|CI453408
genomic: TCTTACGAAATTCCACATACCTGCTGAAGAATTTTTGGCTCCAATGAAAGgtaaaaataa ... atgcaagcagATATGCAATTTGCTTTTCAAGTGGGAATAACACATTTCTACCACATTTTCT
EST: TCTTACGAAATTCCACATACCTGCTGAAGAATTTTTGGCTCCAATGAAAG ATATGCAATTTGCTTTTCAAGTGGGAATAACACATTTCTACCACATTTTCT
genomic: TCTTACGAAATTCCACATACCTGCTGAAGAATTTTTGGCTCCAATGAAAGgtaaaaataa ... atgcaagcagATATGCAATTTGCTTTTCAAGTGGGAATAACACATTTCTACCACATTTTCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTCACTCATAACGAGCTGATCGCAATGTGGGAAAAACTCTCTGGAAAAAGTCTTACGAAATTCCACATACCTGCTGAAGAATTTTTGGCTCCAATGAAAGgtaaaaataaactgcttaccgatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatacacacacatctaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA