Skip to another splice site:
1  
 5'  3'   
2  
 5'  3'   
3  
 5'  3'   
4  
 5'  3'   
5  
 5'  3'   
6  
 5'  3'   
7  
 5'  3'   
8  
 5'  3'   
9  
 5'  3'   
10  
 5'  3'   
11  
 5'  3'   
12  
 5'  3'   
13  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACCATTCAATTTCGAGTCAGGAGGGTCAGCCAAGAGCCTACCGAAGCTTCATCTCAATCCCTATAGCTGGTCCAAGgttggccatgcccatatatctattggccctgcatacataatgagctgaaattttctgttgtctgaatgagactggtgatatttttctgtgtgtgagcttag

Basic information

species Oryza sativa
transcript LOC_Os12g15470.2
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|117240321|gb|CT842747.1|CT842747
EST:     CAGCCAAGAGCCTACCGAAGCTTCATCTCAATCCCTATAGCTGGTCCAAG                         GTATCCAGTGTGATCTACTTGGATTCCCCTGCTGGTGTGGGGCTGTCATAC
genomic: CAGCCAAGAGCCTACCGAAGCTTCATCTCAATCCCTATAGCTGGTCCAAGgttggccatg ... gtgagcttagGTATCCAGTGTGATCTACTTGGATTCCCCTGCTGGTGTGGGGCTGTCATAC
EST: gi|29659836|gb|CB656111.1|CB656111
EST:     CAGCCAAGAGCCTACCGAAGCTTCATCTCAATCCCTATAGCTGGTCCAAG                         GTATCCAGTGTGATCTACTTGGATTCCCCTGCTGGTGTGGGGCTGTCATAC
genomic: CAGCCAAGAGCCTACCGAAGCTTCATCTCAATCCCTATAGCTGGTCCAAGgttggccatg ... gtgagcttagGTATCCAGTGTGATCTACTTGGATTCCCCTGCTGGTGTGGGGCTGTCATAC
EST: gi|29668081|gb|CB664356.1|CB664356
EST:     CAGCCAAGAGCCTACCGAAGCTTCATCTCAATCCCTATAGCTGGTCCAAG                         GTATCCAGTGTGATCTACTTGGATTCCCCTGCTGGTGTGGGGCTGTCATAC
genomic: CAGCCAAGAGCCTACCGAAGCTTCATCTCAATCCCTATAGCTGGTCCAAGgttggccatg ... gtgagcttagGTATCCAGTGTGATCTACTTGGATTCCCCTGCTGGTGTGGGGCTGTCATAC
EST: gi|58695212|gb|CK083899.1|CK083899
EST:     CAGCCAAGAGCCTACCGAAGCTTCATCTCAATCCCTATAGCTGGTCCAAG                         GTATCCAGTGTGATCTACTTGGATTCCCCTGCTGGTGTGGGGCTGTCATAC
genomic: CAGCCAAGAGCCTACCGAAGCTTCATCTCAATCCCTATAGCTGGTCCAAGgttggccatg ... gtgagcttagGTATCCAGTGTGATCTACTTGGATTCCCCTGCTGGTGTGGGGCTGTCATAC
EST: gi|88721922|gb|CI743434.1|CI743434
EST:     CAGCCAAGAGCCTACCGAAGCTTCATCTCAATCCCTATAGCTGGTCCAAG                         GTATCCAGTGTGATCTACTTGGATTCCCCTGCTGGTGTGGGGCTGTCATAC
genomic: CAGCCAAGAGCCTACCGAAGCTTCATCTCAATCCCTATAGCTGGTCCAAGgttggccatg ... gtgagcttagGTATCCAGTGTGATCTACTTGGATTCCCCTGCTGGTGTGGGGCTGTCATAC
EST: gi|33801783|gb|CF326764.1|CF326764
EST:     CAGCCAAGAGCCTACCGAAGCTTCATCTCAATCCCTATAGCTGGTCCAAG                         GTATCCAGTGTGATCTACTTGGATTCCCCTGCTGGTGTGGGGCTGTCATAC
genomic: CAGCCAAGAGCCTACCGAAGCTTCATCTCAATCCCTATAGCTGGTCCAAGgttggccatg ... gtgagcttagGTATCCAGTGTGATCTACTTGGATTCCCCTGCTGGTGTGGGGCTGTCATAC
EST: gi|58660840|gb|CK049520.1|CK049520
EST:     CAGCCAAGAGCCTACCGAAGCTTCATCTCAATCCCTATAGCTGGTCCAAG                         GTATCCAGTGTGATCTACTTGGATTCCCCTGCTGGTGTGGGGCTGTCATAC
genomic: CAGCCAAGAGCCTACCGAAGCTTCATCTCAATCCCTATAGCTGGTCCAAGgttggccatg ... gtgagcttagGTATCCAGTGTGATCTACTTGGATTCCCCTGCTGGTGTGGGGCTGTCATAC
EST: gi|4715276|gb|AU056393.1|AU056393
EST:     CAGCCAAGAGCCTACCGAAGCTTCATCTCAATCCCTATAGCTGGTCCAAG                         GTATCCAGTGTGATCTACTTGGATTCCCCTGCTGGTGTGGGGCTGTCATAC
genomic: CAGCCAAGAGCCTACCGAAGCTTCATCTCAATCCCTATAGCTGGTCCAAGgttggccatg ... gtgagcttagGTATCCAGTGTGATCTACTTGGATTCCCCTGCTGGTGTGGGGCTGTCATAC