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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGAAAAAGGCGAGTTCCCTTGCACAGCATCAACACTCCGTGAAGTTCGTGGCATTGGGGATTACACAGCAGGAGCCATTGCTTCCATAGCCTTCAATGAGgttgtgctccacataatttatatctgattcaaatcaccatgggtgtgatcctttacatactcacatgattatgtaactttcttgctaatgtag

Basic information

species Oryza sativa
transcript LOC_Os12g10850.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os12g10850.1 (Oryza sativa), 5'ss of exon 3
lower sequence: GRMZM2G425986_T02 (Zea mays), 5'ss of exon 3
TGAAAAAGGCGAGTTCCCTTGCACAGCATCAACACTCCGTGAAGTTCGTGGCATTGGGGATTACACAGCAGGAGCCATTGCTTCCATAGCCTTCAATGAGgttgtgctccacataatttatatctgattcaaatcaccatgggtgtgatcctttacatactcacatgattatgtaactttcttgctaatgtag---
 ||||| ||   ||| |||||||| || | | | || ||||| |||||||||||||||||||||||||| ||||| || ||||| || |||||||| |||||||| |     | | ||||        | |||| |   || |  |  || ||| | |  ||  |||| | ||| | |||  |   | | | |   
CGAAAAGGGGTTGTTTCCTTGCACGGCGTTAGCCCTTCGTGAGGTTCGTGGCATTGGGGATTACACAGCTGGAGCAATCGCTTCAATTGCCTTCAACGAGgttgttc-----acagtttagcaactcgtgaaattagtgtgtgcattttcttttcctttttcgaatgactttgtgaattttctatcattattgtag

upper sequence: LOC_Os12g10850.1 (Oryza sativa), 5'ss of exon 3
lower sequence: GRMZM2G425986_T01 (Zea mays), 5'ss of exon 3
---------------------------------------------------------TGAAAAAGGCGAGTTCCCTTGCACAGCATCAACACTCCGTGAAGTTCGTGGCATTGGGGATTACACAGCAGGAGCCATTGCTTCCATAGCCTTCAATGAGgttgtgctccacataatttatatctgattcaaatcaccatgggtgtgatcctttacatactcacatgattatgtaactttcttgctaatgtag---
                                                          ||||| ||   ||| |||||||| || | | | || ||||| |||||||||||||||||||||||||| ||||| || ||||| || |||||||| |||||||| |     | | ||||        | |||| |   || |  |  || ||| | |  ||  |||| | ||| | |||  |   | | | |   
CTGTGGTTTATGGTCCATCTTCTTTATGATGGAGAAACAGGGAGCAAAGCAGATCATCGAAAAGGGGTTGTTTCCTTGCACGGCGTTAGCCCTTCGTGAGgttcgtggcattggggattacacagctggagcaatcgcttcaattgccttcaacgaggttgttc-----acagtttagcaactcgtgaaattagtgtgtgcattttcttttcctttttcgaatgactttgtgaattttctatcattattgtag