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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCGATTGCTGATCTTGGTGGCACCGAGATCGACCTGCGGTTTGCGAATTCCAAGCAGGGACGTTTGTTCGTCGTTGTAGCACCGGTTCGCAGGTTTGCAGgtgagaagcacattcttctgaagagaatgcagtttctgtaagatcttcctaggatggtaacaatcttagcactactaactgacatgatgaactgtgcgaag

Basic information

species Oryza sativa
transcript LOC_Os12g08830.2
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|27547203|gb|CA765413.2|CA765413
EST:     CAAGCAGGGACGTTTGTTCGTCGTTGTAGCACCGGTTCGCAGGTTTGCAG                         AACTCGACGATGCGACAATTGAAAAGATCGGTACACCGGAGAAGGTGATCG
genomic: CAAGCAGGGACGTTTGTTCGTCGTTGTAGCACCGGTTCGCAGGTTTGCAGgtgagaagca ... ctgtgcgaagAACTCGACGATGCGACAATTGAAAAGATCGGTACACCGGAGAAGGTGATCG
EST: gi|86849405|gb|CI299632.1|CI299632
EST:     CAAGCAGGGACGTTTGTTCGTCGTTGTAGCACCGGTTCGCAGGTTTGCAG                         AACTCGACGATGCGACAATTGAAAAGATCGGTACACCGGAGAAGGTGATCG
genomic: CAAGCAGGGACGTTTGTTCGTCGTTGTAGCACCGGTTCGCAGGTTTGCAGgtgagaagca ... ctgtgcgaagAACTCGACGATGCGACAATTGAAAAGATCGGTACACCGGAGAAGGTGATCG
EST: gi|33673774|gb|CF302013.1|CF302013
EST:     CAAGCAGGGACGTTTGTTCGTCGTTGTAGCACCGGTTCGCAGGTTTGCAG                         AACTCGACGATGCGACAATTGAAAAGATCGGTACACCGGAGAAGGTGATCG
genomic: CAAGCAGGGACGTTTGTTCGTCGTTGTAGCACCGGTTCGCAGGTTTGCAGgtgagaagca ... ctgtgcgaagAACTCGACGATGCGACAATTGAAAAGATCGGTACACCGGAGAAGGTGATCG
EST: gi|14571429|gb|BI118797.1|BI118797
EST:     CAAGCAGGGACGTTTGTTCGTCGTTGTAGCACCGGTTCGCAGGTTTGCAG                         AACTCGACGATGCGACAACTGAAAAGATCGGT
genomic: CAAGCAGGGACGTTTGTTCGTCGTTGTAGCACCGGTTCGCAGGTTTGCAGgtgagaagca ... ctgtgcgaagAACTCGACGATGCGACAATTGAAAAGATCGGT
EST: gi|88839416|gb|CI005204.1|CI005204
EST:     CAAGCAGGGACGTTTGTTCGTCGTTGTAGCACCGGTTCGCAGGTTTGCAG                         AACTCGACGATGCGACAATTGAAAAGATCGGTACACCGGAGAAGGTGATCG
genomic: CAAGCAGGGACGTTTGTTCGTCGTTGTAGCACCGGTTCGCAGGTTTGCAGgtgagaagca ... ctgtgcgaagAACTCGACGATGCGACAATTGAAAAGATCGGTACACCGGAGAAGGTGATCG
EST: gi|88965272|gb|CI009308.1|CI009308
EST:     CAAGCAGGGACGTTTGTTCGTCGTTGTAGCACCGGTTCGCAGGTTTGCAG                         AACTCGACGATGCGACAATTGAAAAGATCGGTACACCGGAGAAGGTGATCG
genomic: CAAGCAGGGACGTTTGTTCGTCGTTGTAGCACCGGTTCGCAGGTTTGCAGgtgagaagca ... ctgtgcgaagAACTCGACGATGCGACAATTGAAAAGATCGGTACACCGGAGAAGGTGATCG