1 5' 3' | 2 5' 3' | 3 5' 3' |
CGGCGAAAAGATACTCCCGTGCAACCTGTACAGAATATACAATATTTATGAGTGCTGACAATACATCTAGGTCAAGCAACATGTACATTGGAAAATTGAGgtaataacccaaaataatggcaactttgtttagagaaggtacatcgtctaagtgttttaatggtataatctgatatatttactgtgttggacttttag
species | Oryza sativa |
transcript | LOC_Os12g06630.2 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: AGTGCTGACAATACATCTAGGTCAAGCAACATGTACATTGGAAAATTGAG GTCAAATCTTCTCGGAACAAAGTTTGTAATATATGATACCCAACCTCCATGEST: gi|33810127|gb|CF330953.1|CF330953
genomic: AGTGCTGACAATACATCTAGGTCAAGCAACATGTACATTGGAAAATTGAGgtaataaccc ... ggacttttagGTCAAATCTTCTCGGAACAAAGTTTGTAATATATGATACCCAACCTCCATG
EST: AGTGCTGACAATACATCTAGGTCAAGCAACATGTACATTGGAAAATTGAG GTCAAATCTTCTCGGAACAAAGTTTGTAATATATGATACCCAACCTCCATGEST: gi|58672719|gb|CK061405.1|CK061405
genomic: AGTGCTGACAATACATCTAGGTCAAGCAACATGTACATTGGAAAATTGAGgtaataaccc ... ggacttttagGTCAAATCTTCTCGGAACAAAGTTTGTAATATATGATACCCAACCTCCATG
EST: AGTGCTGACAATACATCTAGGTCAAGCAACATGTACATTGGAAAATTGAG GTCAAATCTTCTCGGAACAAAGTTTGTAATATATGATACCCAACCTCCATGEST: gi|570076|gb|D40925.1|D40925
genomic: AGTGCTGACAATACATCTAGGTCAAGCAACATGTACATTGGAAAATTGAGgtaataaccc ... ggacttttagGTCAAATCTTCTCGGAACAAAGTTTGTAATATATGATACCCAACCTCCATG
EST: GCTGACAATACATCTAGGTCAAGCAACATGTACATTGGAAAATTGAG GTCAAATCTTCTCGGAACAAAGTTTGTAATATATGATACCCAACCTCCATGEST: gi|58692203|gb|CK080890.1|CK080890
genomic: GCTGACAATACATCTAGGTCAAGCAACATGTACATTGGAAAATTGAGgtaataaccc ... ggacttttagGTCAAATCTTCTCGGAACAAAGTTTGTAATATATGATACCCAACCTCCATG
EST: TGGAAAATTGAG GTCAAATCTTCTCGGAACAAAGTTTGTAATATATGATACCCAACCTCCATGEST: gi|38473160|gb|CF957292.1|CF957292
genomic: TGGAAAATTGAGgtaataaccc ... ggacttttagGTCAAATCTTCTCGGAACAAAGTTTGTAATATATGATACCCAACCTCCATG
EST: AGTGCTGACAATACATCTAGGTCAAGCAACATGTACATTGGAAAATTGAG GTCAAATCTTCTCGGAACAAAGTTTGTAATATATGATACCCAACCTCCATGEST: gi|58680304|gb|CK068991.1|CK068991
genomic: AGTGCTGACAATACATCTAGGTCAAGCAACATGTACATTGGAAAATTGAGgtaataaccc ... ggacttttagGTCAAATCTTCTCGGAACAAAGTTTGTAATATATGATACCCAACCTCCATG
EST: AGTGCTGACAATACATCTAGGTCAAGCAACATGTACATTGGAAAATTGAG GTCAAATCTTCTCGGAACAAAGTTTGTAATATATGATACCCAACCTCCATGEST: gi|11170889|gb|AU163519.1|AU163519
genomic: AGTGCTGACAATACATCTAGGTCAAGCAACATGTACATTGGAAAATTGAGgtaataaccc ... ggacttttagGTCAAATCTTCTCGGAACAAAGTTTGTAATATATGATACCCAACCTCCATG
EST: AGTGCTGACAATACATCTAGGTCAAGCAACATGTACATTGGAAAATTGAG GTCAAATCTTCTCGGAACAAAGTTTGTAATATATGATACCCAACCTCCATG
genomic: AGTGCTGACAATACATCTAGGTCAAGCAACATGTACATTGGAAAATTGAGgtaataaccc ... ggacttttagGTCAAATCTTCTCGGAACAAAGTTTGTAATATATGATACCCAACCTCCATG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGGCGAAAAGATACTCCCGTGCAACCTGTACAGAATATACAATATTTATGAGTGCTGACAATACATCTAGGTCAAGCAACATGTACATTGGAAAATTGAGgtaataacccaaaataatggcaactttgtttagagaaggtacatcgtctaagtgttttaatggtataatctgatatatttactgtgttggacttttag
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